Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35797 * 116.99732 * 2 1 4 4 N 1.29585 * 122.07142 * 0.24975 * 3 2 1 5 5 S 1.69235 * 108.66527 * 180.22304 * 4 3 2 6 6 C 1.71810 * 96.89923 * 359.73435 * 5 4 3 7 7 C 1.38915 * 105.86085 * 0.02562 * 6 5 4 8 8 C 1.41344 * 123.64398 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99824 * 199.42712 * 8 7 6 10 10 C 1.39722 * 119.99638 * 19.42766 * 8 7 6 11 11 N 1.31039 * 120.00398 * 10.83226 * 10 8 7 12 12 Si 1.86806 * 119.99731 * 190.82700 * 10 8 7 13 13 H 1.48497 * 109.46923 * 90.00287 * 12 10 8 14 14 H 1.48498 * 109.46972 * 210.00399 * 12 10 8 15 15 H 1.48505 * 109.47065 * 330.00215 * 12 10 8 16 16 H 1.08997 * 109.47019 * 60.00492 * 1 2 3 17 17 H 1.08998 * 109.46939 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47276 * 299.99799 * 1 2 3 19 19 H 1.08010 * 127.07071 * 180.02562 * 6 5 4 20 20 H 0.97000 * 120.00091 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 7 1.3794 2.3215 0.0048 5 16 2.4763 3.6103 -0.0032 6 6 3.9090 2.6619 -0.0056 7 6 3.4880 1.3381 -0.0006 8 6 4.3720 0.2352 -0.0013 9 1 4.0202 -0.7385 -0.3085 10 6 5.7008 0.4049 0.3957 11 7 6.0765 1.5229 0.9666 12 14 6.9420 -0.9622 0.1125 13 1 7.5772 -0.7862 -1.2182 14 1 7.9841 -0.9113 1.1692 15 1 6.2511 -2.2759 0.1614 16 1 -0.3633 0.5137 -0.8900 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 4.9276 3.0211 -0.0100 20 1 6.9990 1.6405 1.2425 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711963004.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = -10.912938 kcal Electronic energy + Delta-G solvation = -9160.173607 eV Core-core repulsion = 7255.830719 eV Total energy + Delta-G solvation = -1904.342888 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.67391 -35.42990 -33.28295 -29.57996 -27.01003 -25.63877 -22.03588 -19.40305 -17.29172 -16.62449 -15.71652 -15.15113 -14.42670 -13.99782 -12.91255 -12.34738 -11.71484 -11.51138 -11.40230 -11.22377 -10.68666 -10.41929 -10.19425 -9.65969 -9.31308 -9.14809 -7.93248 -7.02277 -6.68178 -4.32921 2.45018 2.92328 3.02609 3.10534 3.14765 3.61982 3.92843 3.99444 4.23800 5.17483 5.69884 5.76328 5.95441 6.27179 7.14277 7.34245 7.45229 7.67549 8.08460 8.49109 8.65994 8.84617 10.27717 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.046594 B = 0.015932 C = 0.012124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.786119 B = 1757.036095 C = 2308.823737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.292 6.292 3 C 0.293 3.707 4 N -0.556 5.556 5 S 0.125 5.875 6 C -0.315 4.315 7 C 0.021 3.979 8 C -0.411 4.411 9 H 0.082 0.918 10 C 0.063 3.937 11 N -0.802 5.802 12 Si 0.920 3.080 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.263 1.263 16 H 0.049 0.951 17 H 0.088 0.912 18 H 0.050 0.950 19 H 0.179 0.821 20 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -1.746 -1.187 3.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.198 6.198 3 C 0.070 3.930 4 N -0.392 5.392 5 S 0.269 5.731 6 C -0.461 4.461 7 C 0.008 3.992 8 C -0.446 4.446 9 H 0.100 0.900 10 C -0.153 4.153 11 N -0.429 5.429 12 Si 0.744 3.256 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.187 1.187 16 H 0.068 0.932 17 H 0.106 0.894 18 H 0.068 0.932 19 H 0.196 0.804 20 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.736 -0.322 -1.070 3.899 hybrid contribution 1.483 -1.947 -0.001 2.447 sum -2.253 -2.269 -1.072 3.373 Atomic orbital electron populations 1.22748 0.79403 1.01954 1.01561 1.86242 1.20622 1.24388 1.88563 1.22344 0.91312 0.83665 0.95658 1.75453 1.28808 1.01626 1.33280 1.82611 0.95481 1.14785 1.80207 1.25897 1.00985 0.94128 1.25065 1.18118 0.85866 0.94791 1.00459 1.19017 0.93135 0.95130 1.37294 0.89988 1.25790 0.99283 0.97044 0.93173 1.69804 1.18451 1.25432 1.29201 0.86115 0.79515 0.81204 0.78724 1.19454 1.20374 1.18675 0.93203 0.89366 0.93154 0.80394 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.48 101.05 1.06 1.75 14 2 O -0.29 -6.75 10.32 -19.11 -0.20 -6.95 14 3 C 0.29 7.54 7.63 -15.90 -0.12 7.42 14 4 N -0.56 -13.82 11.02 30.84 0.34 -13.48 14 5 S 0.13 2.98 23.62 -107.50 -2.54 0.44 14 6 C -0.32 -8.38 10.02 30.98 0.31 -8.07 14 7 C 0.02 0.57 5.75 -105.87 -0.61 -0.04 14 8 C -0.41 -11.17 9.10 -37.85 -0.34 -11.51 14 9 H 0.08 2.16 7.86 -52.49 -0.41 1.75 14 10 C 0.06 1.59 5.38 -17.34 -0.09 1.50 14 11 N -0.80 -20.92 10.75 55.54 0.60 -20.33 14 12 Si 0.92 19.02 29.57 -169.99 -5.03 14.00 14 13 H -0.27 -5.49 7.11 56.52 0.40 -5.08 14 14 H -0.28 -5.63 7.11 56.52 0.40 -5.22 14 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 14 16 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 17 H 0.09 1.20 8.14 -51.93 -0.42 0.78 14 18 H 0.05 0.87 8.14 -51.93 -0.42 0.44 14 19 H 0.18 4.82 6.37 -52.48 -0.33 4.49 14 20 H 0.28 6.61 8.30 -40.82 -0.34 6.27 14 LS Contribution 201.93 15.07 3.04 3.04 Total: -1.00 -28.62 201.93 -4.73 -33.35 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -1.15 Total: -1.13 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 0.20 Total: -8.95 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.94 Total: -33.81 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.20 Total: -6.95 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.54 Total: 0.44 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -28.62 -4.73 -33.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711963004.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.441 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds