Wall clock time and date at job start Mon Mar 30 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48494 * 109.47468 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47051 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.46909 * 149.99475 * 3 2 1 7 7 C 1.37883 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00279 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00154 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47150 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99949 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.52995 * 117.49622 * 218.61892 * 14 13 12 16 16 C 1.52994 * 117.49857 * 149.99662 * 14 13 12 17 17 H 0.96996 * 120.00129 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.47227 * 59.99563 * 9 7 2 19 19 H 1.08999 * 109.47038 * 299.99744 * 9 7 2 20 20 H 1.00901 * 110.99701 * 303.94967 * 10 9 7 21 21 H 1.09001 * 109.47063 * 59.99499 * 11 10 9 22 22 H 1.09004 * 109.46681 * 300.00124 * 11 10 9 23 23 H 1.09002 * 109.47153 * 304.99641 * 12 11 10 24 24 H 1.09001 * 109.46832 * 184.99832 * 12 11 10 25 25 H 1.09002 * 115.54532 * 4.32983 * 14 13 12 26 26 H 1.08997 * 117.50686 * 0.02562 * 15 14 13 27 27 H 1.09003 * 117.49393 * 145.01845 * 15 14 13 28 28 H 1.08998 * 117.50151 * 214.98095 * 16 14 13 29 29 H 1.08998 * 117.49984 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4697 -2.6184 0.0011 12 6 5.9410 -4.0739 0.0003 13 8 5.5470 -4.7015 -1.2216 14 6 5.9400 -6.0716 -1.3244 15 6 6.4153 -6.5695 -2.6908 16 6 5.0502 -7.0016 -2.1515 17 1 -0.4850 0.8400 -0.0004 18 1 3.8745 -0.6808 0.8905 19 1 3.8752 -0.6798 -0.8895 20 1 3.6254 -3.0955 0.7811 21 1 5.8459 -2.1147 0.8915 22 1 5.8473 -2.1140 -0.8884 23 1 5.4915 -4.6019 0.8414 24 1 7.0268 -4.1043 0.0907 25 1 6.4213 -6.4901 -0.4404 26 1 6.4286 -5.8521 -3.5112 27 1 7.2096 -7.3158 -2.7060 28 1 4.9464 -8.0322 -1.8120 29 1 4.1648 -6.5686 -2.6169 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715032819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:18 Heat of formation + Delta-G solvation = -17.182511 kcal Electronic energy + Delta-G solvation = -10951.111145 eV Core-core repulsion = 8875.409706 eV Total energy + Delta-G solvation = -2075.701439 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.38800 -35.91158 -34.29561 -32.31867 -29.25775 -25.98271 -22.35401 -21.81627 -21.77409 -21.05140 -17.17188 -16.68375 -15.32882 -15.12793 -14.75504 -14.17474 -13.52353 -13.25547 -12.86647 -12.36545 -11.89247 -11.63025 -11.49793 -11.28012 -10.78325 -10.62412 -10.39543 -10.32245 -9.78960 -9.25441 -8.92817 -8.55497 -7.38487 -6.02324 -3.99902 3.31538 3.38062 3.40437 3.67477 3.89502 4.45016 4.82884 4.96077 5.06687 5.14208 5.30443 5.39785 5.49089 5.57443 5.63958 5.79407 5.95949 5.99995 6.19101 6.26830 6.80365 7.05029 7.46922 7.65115 7.93552 8.38854 8.69659 9.06460 9.59625 11.11105 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.066773 B = 0.007336 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.229584 B = 3815.814274 C = 4041.814257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.673 5.673 11 C 0.055 3.945 12 C 0.070 3.930 13 O -0.334 6.334 14 C 0.017 3.983 15 C -0.194 4.194 16 C -0.185 4.185 17 H 0.263 0.737 18 H -0.017 1.017 19 H 0.022 0.978 20 H 0.334 0.666 21 H 0.035 0.965 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.485 -9.686 -0.523 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.303 5.303 11 C -0.075 4.075 12 C -0.007 4.007 13 O -0.252 6.252 14 C -0.042 4.042 15 C -0.232 4.232 16 C -0.222 4.222 17 H 0.073 0.927 18 H 0.000 1.000 19 H 0.040 0.960 20 H 0.151 0.849 21 H 0.053 0.947 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.172 -9.515 -1.350 16.305 hybrid contribution 0.691 1.078 1.052 1.657 sum 13.863 -8.437 -0.298 16.231 Atomic orbital electron populations 1.69903 1.06155 1.26828 1.51154 1.24918 0.94769 0.98960 0.94795 0.86801 0.80185 0.83792 0.78586 1.20138 1.21246 1.19312 1.21076 0.88972 0.94832 1.50372 0.90276 1.20013 0.96717 0.85067 0.94666 1.60419 1.03903 1.16538 1.49477 1.21974 0.91597 0.93384 1.00519 1.22622 0.97261 0.94241 0.86565 1.88044 1.78003 1.21020 1.38088 1.22615 1.02396 0.84499 0.94704 1.23364 0.97789 1.03494 0.98525 1.23305 0.95408 0.99230 1.04232 0.92684 0.99966 0.95970 0.84901 0.94706 0.90847 0.93425 0.93528 0.87831 0.88272 0.88728 0.88557 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.51 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 15 7 C -0.51 -15.23 9.87 -34.44 -0.34 -15.57 15 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 15 9 C 0.16 4.13 4.51 -4.98 -0.02 4.11 15 10 N -0.67 -14.74 6.44 -115.05 -0.74 -15.48 15 11 C 0.06 0.96 6.07 -3.82 -0.02 0.94 15 12 C 0.07 1.02 6.09 37.16 0.23 1.25 15 13 O -0.33 -5.58 10.54 -35.23 -0.37 -5.95 15 14 C 0.02 0.21 6.44 -26.74 -0.17 0.04 15 15 C -0.19 -2.19 10.48 -26.73 -0.28 -2.47 15 16 C -0.18 -2.21 10.48 -26.74 -0.28 -2.49 15 17 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 18 H -0.02 -0.43 7.20 -51.93 -0.37 -0.80 15 19 H 0.02 0.57 7.57 -51.93 -0.39 0.18 15 20 H 0.33 7.01 8.72 -39.29 -0.34 6.66 15 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 25 H 0.10 1.09 7.93 -51.93 -0.41 0.68 15 26 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 29 H 0.10 1.40 8.14 -51.93 -0.42 0.98 15 LS Contribution 251.49 15.07 3.79 3.79 Total: -1.00 -32.28 251.49 -6.70 -38.98 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.49 Total: 1.08 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.99 Total: -12.29 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.03 Total: -42.99 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.37 Total: -5.95 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.28 -6.70 -38.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715032819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.801 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds