Wall clock time and date at job start Mon Mar 30 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48494 * 109.47468 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47051 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.46909 * 149.99475 * 3 2 1 7 7 C 1.37883 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00279 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00154 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47150 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99949 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.52995 * 117.49622 * 218.61892 * 14 13 12 16 16 C 1.52994 * 117.49857 * 149.99662 * 14 13 12 17 17 H 0.96996 * 120.00129 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.47227 * 59.99563 * 9 7 2 19 19 H 1.08999 * 109.47038 * 299.99744 * 9 7 2 20 20 H 1.00901 * 110.99701 * 303.94967 * 10 9 7 21 21 H 1.09001 * 109.47063 * 59.99499 * 11 10 9 22 22 H 1.09004 * 109.46681 * 300.00124 * 11 10 9 23 23 H 1.09002 * 109.47153 * 304.99641 * 12 11 10 24 24 H 1.09001 * 109.46832 * 184.99832 * 12 11 10 25 25 H 1.09002 * 115.54532 * 4.32983 * 14 13 12 26 26 H 1.08997 * 117.50686 * 0.02562 * 15 14 13 27 27 H 1.09003 * 117.49393 * 145.01845 * 15 14 13 28 28 H 1.08998 * 117.50151 * 214.98095 * 16 14 13 29 29 H 1.08998 * 117.49984 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4697 -2.6184 0.0011 12 6 5.9410 -4.0739 0.0003 13 8 5.5470 -4.7015 -1.2216 14 6 5.9400 -6.0716 -1.3244 15 6 6.4153 -6.5695 -2.6908 16 6 5.0502 -7.0016 -2.1515 17 1 -0.4850 0.8400 -0.0004 18 1 3.8745 -0.6808 0.8905 19 1 3.8752 -0.6798 -0.8895 20 1 3.6254 -3.0955 0.7811 21 1 5.8459 -2.1147 0.8915 22 1 5.8473 -2.1140 -0.8884 23 1 5.4915 -4.6019 0.8414 24 1 7.0268 -4.1043 0.0907 25 1 6.4213 -6.4901 -0.4404 26 1 6.4286 -5.8521 -3.5112 27 1 7.2096 -7.3158 -2.7060 28 1 4.9464 -8.0322 -1.8120 29 1 4.1648 -6.5686 -2.6169 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715032819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:18 Heat of formation + Delta-G solvation = -41.496876 kcal Electronic energy + Delta-G solvation = -10952.165495 eV Core-core repulsion = 8875.409706 eV Total energy + Delta-G solvation = -2076.755789 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.46775 -37.37712 -35.65811 -34.42045 -30.95246 -27.80035 -23.43406 -23.24436 -22.81699 -22.78256 -19.00051 -18.16224 -16.88393 -16.32099 -16.02160 -15.98551 -15.07373 -14.72071 -14.39355 -14.20336 -13.41676 -13.18700 -12.83275 -12.50276 -12.38443 -12.06543 -11.87131 -11.76042 -11.47712 -11.29835 -10.82115 -9.95763 -9.09407 -8.31153 -6.36178 1.34545 1.36723 1.47739 2.33654 2.65423 2.97379 3.02549 3.51789 3.94774 4.05606 4.09443 4.31047 4.38531 4.50753 4.65299 4.73207 4.78478 4.82213 4.95216 5.05217 5.07187 5.28050 5.50908 5.93494 6.43556 6.55676 6.66424 6.77643 7.28813 8.85874 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.066773 B = 0.007336 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.229584 B = 3815.814274 C = 4041.814257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.034 0.966 9 C 0.174 3.826 10 N -0.689 5.689 11 C 0.053 3.947 12 C 0.074 3.926 13 O -0.374 6.374 14 C 0.000 4.000 15 C -0.183 4.183 16 C -0.193 4.193 17 H 0.268 0.732 18 H -0.008 1.008 19 H 0.021 0.979 20 H 0.336 0.664 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.972 -9.521 -0.095 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.052 0.948 9 C 0.046 3.954 10 N -0.321 5.321 11 C -0.076 4.076 12 C -0.003 4.003 13 O -0.293 6.293 14 C -0.058 4.058 15 C -0.220 4.220 16 C -0.230 4.230 17 H 0.077 0.923 18 H 0.009 0.991 19 H 0.039 0.961 20 H 0.153 0.847 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.104 0.896 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.680 -9.376 -0.921 18.293 hybrid contribution -0.129 0.907 0.895 1.281 sum 15.551 -8.469 -0.026 17.708 Atomic orbital electron populations 1.70060 1.08244 1.28316 1.52251 1.25948 0.95727 1.03517 0.94016 0.85582 0.79314 0.77974 0.79214 1.19231 1.20385 1.17172 1.21358 0.91520 0.93409 1.50650 0.94808 1.19759 0.93690 0.87252 0.94732 1.60305 1.07164 1.14572 1.50011 1.22101 0.88469 0.95959 1.01120 1.22636 0.99169 0.92204 0.86277 1.87978 1.78985 1.23170 1.39122 1.22976 1.03270 0.83054 0.96506 1.23427 0.98020 1.03419 0.97107 1.23369 0.94933 1.00292 1.04452 0.92283 0.99071 0.96109 0.84684 0.92558 0.91539 0.92513 0.90120 0.85096 0.89637 0.85713 0.86092 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 15 2 C 0.01 0.32 5.47 84.66 0.46 0.78 15 3 Si 0.96 45.04 27.47 68.60 1.88 46.93 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 15 7 C -0.53 -32.17 9.87 25.60 0.25 -31.92 15 8 H 0.03 2.28 8.06 -2.91 -0.02 2.25 15 9 C 0.17 8.71 4.51 85.56 0.39 9.09 15 10 N -0.69 -29.94 6.44 -517.92 -3.34 -33.27 15 11 C 0.05 1.74 6.07 86.30 0.52 2.26 15 12 C 0.07 1.97 6.09 71.98 0.44 2.41 15 13 O -0.37 -12.06 10.54 -148.98 -1.57 -13.63 15 14 C 0.00 -0.01 6.44 30.59 0.20 0.19 15 15 C -0.18 -3.75 10.48 30.59 0.32 -3.43 15 16 C -0.19 -4.41 10.48 30.59 0.32 -4.09 15 17 H 0.27 15.90 8.31 -92.71 -0.77 15.13 15 18 H -0.01 -0.40 7.20 -2.38 -0.02 -0.41 15 19 H 0.02 1.04 7.57 -2.39 -0.02 1.03 15 20 H 0.34 14.13 8.72 -89.69 -0.78 13.34 15 21 H 0.06 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 24 H 0.08 1.62 8.14 -2.39 -0.02 1.61 15 25 H 0.13 2.33 7.93 -2.39 -0.02 2.31 15 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.12 2.10 8.14 -2.39 -0.02 2.08 15 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 Total: -1.00 -70.75 251.49 0.46 -70.29 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.28 Total: 14.88 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 2.90 Total: -24.71 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -3.04 Total: -93.76 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.57 Total: -13.63 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -70.75 0.46 -70.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715032819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.798 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds