Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09000 * 115.54856 * 330.71982 * 11 10 9 13 13 C 1.53000 * 117.50153 * 116.38838 * 11 10 9 14 14 C 1.53005 * 60.00196 * 107.49387 * 13 11 10 15 15 H 1.09005 * 117.49722 * 252.51652 * 14 13 11 16 16 C 1.50694 * 117.50389 * 107.49098 * 14 13 11 17 17 O 1.20829 * 119.99883 * 291.38505 * 16 14 13 18 18 O 1.34223 * 120.00008 * 111.37664 * 16 14 13 19 19 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 21 21 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 22 22 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 23 23 H 1.09007 * 117.50010 * 214.97983 * 13 11 10 24 24 H 1.08996 * 117.49970 * 359.97438 * 13 11 10 25 25 H 0.96703 * 117.00047 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.9218 -1.2619 -0.4799 13 6 6.4212 -2.6551 1.2168 14 6 6.5581 -3.3912 -0.1175 15 1 6.1059 -4.3800 -0.1955 16 6 7.8371 -3.1984 -0.8907 17 8 8.0862 -2.1260 -1.3887 18 8 8.6997 -4.2178 -1.0261 19 1 -0.4850 0.8401 0.0004 20 1 3.8646 -0.3620 0.0007 21 1 3.8486 -3.0425 0.8909 22 1 3.8493 -3.0422 -0.8891 23 1 7.2564 -2.0312 1.5354 24 1 5.8790 -3.1591 2.0168 25 1 9.5064 -4.0462 -1.5310 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715295839.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -80.923934 kcal Electronic energy + Delta-G solvation = -10812.849317 eV Core-core repulsion = 8598.550748 eV Total energy + Delta-G solvation = -2214.298569 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.46048 -38.66960 -37.05498 -36.01232 -33.29000 -28.59577 -26.15113 -24.20744 -22.27753 -21.39421 -19.62411 -19.08697 -17.99417 -16.68434 -16.53585 -15.86826 -15.34630 -15.00291 -14.50841 -14.37679 -13.51065 -13.23383 -12.86201 -12.63142 -12.40497 -12.07215 -11.83815 -11.72150 -11.45527 -11.41378 -10.87956 -9.30296 -8.03819 -5.37731 1.03203 1.39176 1.41462 1.48955 1.98443 2.48126 2.71217 3.27774 3.46560 3.75411 3.90264 4.03261 4.32309 4.47250 4.72404 4.84410 4.98634 5.07159 5.26074 5.56457 5.74642 6.20397 6.98010 7.06422 7.82631 8.00947 9.17473 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.071901 B = 0.008406 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.331579 B = 3330.114155 C = 3520.428134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.257 1.257 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.061 0.939 9 N -0.759 5.759 10 C 0.184 3.816 11 C -0.140 4.140 12 H 0.100 0.900 13 C -0.121 4.121 14 C -0.158 4.158 15 H 0.159 0.841 16 C 0.516 3.484 17 O -0.554 6.554 18 O -0.503 6.503 19 H 0.259 0.741 20 H 0.366 0.634 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.108 0.892 24 H 0.132 0.868 25 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.008 -7.408 1.071 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.182 1.182 6 H -0.221 1.221 7 C -0.369 4.369 8 H 0.079 0.921 9 N -0.405 5.405 10 C 0.058 3.942 11 C -0.159 4.159 12 H 0.118 0.882 13 C -0.158 4.158 14 C -0.178 4.178 15 H 0.176 0.824 16 C 0.360 3.640 17 O -0.445 6.445 18 O -0.317 6.317 19 H 0.068 0.932 20 H 0.199 0.801 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.127 0.873 24 H 0.150 0.850 25 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 17.538 -7.325 1.156 19.042 hybrid contribution 0.512 1.215 -0.609 1.453 sum 18.050 -6.109 0.546 19.064 Atomic orbital electron populations 1.69879 1.07065 1.26778 1.59563 1.25488 0.96114 1.01232 1.02478 0.85414 0.78448 0.79672 0.78290 1.19990 1.18223 1.22115 1.19062 0.82516 0.93741 1.41561 0.92067 1.42719 1.02607 1.04162 1.91045 1.20353 0.87146 0.87533 0.99138 1.22485 0.92539 0.97294 1.03566 0.88223 1.23329 1.02002 1.00462 0.89991 1.21856 0.92866 1.00838 1.02211 0.82375 1.22494 0.84425 0.80639 0.76424 1.90725 1.76859 1.29186 1.47746 1.84469 1.34675 1.41628 1.70887 0.93228 0.80110 0.93636 0.95236 0.87317 0.84989 0.70888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.46 13.97 21.65 0.30 -63.16 15 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 15 3 Si 0.95 46.31 27.74 68.60 1.90 48.21 15 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 15 5 H -0.26 -11.55 6.52 99.48 0.65 -10.90 15 6 H -0.29 -14.40 7.11 99.48 0.71 -13.69 15 7 C -0.24 -13.76 10.47 84.03 0.88 -12.88 15 8 H 0.06 3.82 8.06 -2.91 -0.02 3.80 15 9 N -0.76 -36.20 5.41 -343.47 -1.86 -38.05 15 10 C 0.18 6.83 6.54 86.38 0.56 7.40 15 11 C -0.14 -4.18 5.36 -10.79 -0.06 -4.24 15 12 H 0.10 3.39 7.57 -2.39 -0.02 3.37 15 13 C -0.12 -2.64 9.88 30.60 0.30 -2.33 15 14 C -0.16 -3.60 6.02 -11.54 -0.07 -3.67 15 15 H 0.16 2.92 8.14 -2.38 -0.02 2.90 15 16 C 0.52 12.30 8.11 71.23 0.58 12.88 15 17 O -0.55 -17.41 17.02 21.96 0.37 -17.03 15 18 O -0.50 -8.31 13.42 -51.35 -0.69 -9.00 15 19 H 0.26 15.89 8.31 -92.71 -0.77 15.12 15 20 H 0.37 16.87 5.46 -92.71 -0.51 16.36 15 21 H 0.05 1.60 7.88 -2.38 -0.02 1.59 15 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 15 23 H 0.11 2.17 8.14 -2.38 -0.02 2.15 15 24 H 0.13 2.42 8.03 -2.39 -0.02 2.40 15 25 H 0.43 3.26 9.10 -74.06 -0.67 2.59 15 Total: -1.00 -73.07 229.00 2.67 -70.40 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.03 Total: 14.69 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 2.66 Total: -6.05 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -1.55 Total: -101.21 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.32 Total: -26.03 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -73.07 2.67 -70.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715295839.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.523 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds