Wall clock time and date at job start Mon Mar 30 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99539 * 3 2 1 6 6 H 1.48494 * 109.47221 * 149.99447 * 3 2 1 7 7 C 1.38814 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47503 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.52998 * 117.49859 * 218.61728 * 14 13 12 16 16 C 1.52996 * 60.00224 * 252.51152 * 15 14 13 17 17 H 0.96996 * 119.99724 * 0.02562 * 1 2 3 18 18 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 19 19 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 20 20 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 21 21 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 22 22 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 23 23 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 24 24 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 25 25 H 1.08998 * 115.54790 * 4.33182 * 14 13 12 26 26 H 1.08993 * 117.49864 * 0.02562 * 15 14 13 27 27 H 1.09005 * 117.49522 * 145.02185 * 15 14 13 28 28 H 1.08999 * 117.50037 * 252.51220 * 16 15 14 29 29 H 1.08999 * 117.51713 * 107.48427 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3815 -3.5162 0.0004 13 8 7.7864 -3.2551 0.0010 14 6 8.5964 -4.4324 0.0011 15 6 9.8701 -4.4135 0.8486 16 6 9.9653 -4.3480 -0.6770 17 1 -0.4849 0.8400 -0.0004 18 1 3.8647 -0.3620 0.0014 19 1 3.8492 -3.0422 -0.8892 20 1 3.8485 -3.0427 0.8907 21 1 5.8798 -1.6196 -0.8889 22 1 5.8797 -1.6197 0.8911 23 1 6.1182 -4.0882 0.8902 24 1 6.1181 -4.0874 -0.8897 25 1 8.0550 -5.3755 -0.0736 26 1 10.0899 -3.5033 1.4064 27 1 10.1668 -5.3444 1.3319 28 1 10.3248 -5.2357 -1.1974 29 1 10.2480 -3.3947 -1.1235 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717286495.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:17 Heat of formation + Delta-G solvation = -33.597948 kcal Electronic energy + Delta-G solvation = -10790.855588 eV Core-core repulsion = 8714.442322 eV Total energy + Delta-G solvation = -2076.413266 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.54253 -37.41272 -35.95106 -34.02561 -31.84971 -27.01749 -24.02698 -23.27794 -22.97453 -22.37735 -19.64907 -18.11304 -16.87034 -16.68357 -16.07179 -15.80813 -14.98198 -14.83618 -14.81254 -13.92536 -13.22648 -13.11677 -12.70364 -12.52470 -12.40200 -12.15147 -11.99490 -11.82802 -11.75699 -11.34033 -11.00015 -10.05159 -9.34222 -8.05471 -5.40152 1.37781 1.40940 1.48527 2.46107 2.47090 2.93371 3.25720 3.63919 3.91042 4.00157 4.11651 4.15243 4.25438 4.43000 4.56457 4.68478 4.72447 4.76588 4.81648 5.02283 5.24524 5.25332 5.26870 5.72121 6.18334 6.30267 7.04389 7.80073 7.99294 9.15766 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.093815 B = 0.006287 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.387253 B = 4452.654247 C = 4657.062043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.253 1.253 7 C -0.241 4.241 8 H 0.059 0.941 9 N -0.762 5.762 10 C 0.157 3.843 11 C -0.118 4.118 12 C 0.075 3.925 13 O -0.382 6.382 14 C -0.005 4.005 15 C -0.188 4.188 16 C -0.182 4.182 17 H 0.259 0.741 18 H 0.366 0.634 19 H 0.032 0.968 20 H 0.030 0.970 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.128 0.872 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 -8.610 0.037 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.372 4.372 8 H 0.077 0.923 9 N -0.408 5.408 10 C 0.031 3.969 11 C -0.156 4.156 12 C -0.001 4.001 13 O -0.301 6.301 14 C -0.063 4.063 15 C -0.225 4.225 16 C -0.219 4.219 17 H 0.068 0.932 18 H 0.200 0.800 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.145 0.855 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.856 -8.536 0.040 21.613 hybrid contribution -0.225 0.927 0.011 0.954 sum 19.631 -7.609 0.051 21.054 Atomic orbital electron populations 1.69886 1.07109 1.26855 1.59410 1.25560 0.96219 1.01450 1.02360 0.85360 0.78582 0.79330 0.78235 1.20241 1.21908 1.17769 1.19068 0.82592 0.93715 1.41820 0.92332 1.42734 1.02674 1.04268 1.91126 1.20640 0.89817 0.87598 0.98828 1.21538 0.93299 0.97795 1.02954 1.22396 0.79459 0.96728 1.01552 1.87773 1.17402 1.30477 1.94474 1.22991 0.87488 0.89501 1.06295 1.23459 1.00622 1.04312 0.94114 1.23417 0.98627 1.04295 0.95565 0.93185 0.80038 0.95036 0.95156 0.91368 0.91528 0.91852 0.91723 0.85473 0.89222 0.86184 0.86054 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.89 13.97 21.65 0.30 -63.58 15 2 C -0.06 -3.87 5.50 84.86 0.47 -3.41 15 3 Si 0.96 46.36 27.74 68.60 1.90 48.26 15 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 15 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 15 6 H -0.25 -11.14 6.52 99.48 0.65 -10.49 15 7 C -0.24 -14.18 10.47 84.03 0.88 -13.30 15 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 15 9 N -0.76 -37.02 5.41 -343.46 -1.86 -38.88 15 10 C 0.16 6.06 6.26 86.38 0.54 6.60 15 11 C -0.12 -3.66 5.70 30.59 0.17 -3.48 15 12 C 0.08 1.91 5.81 71.98 0.42 2.33 15 13 O -0.38 -10.20 10.60 -148.98 -1.58 -11.78 15 14 C -0.01 -0.10 6.44 30.59 0.20 0.10 15 15 C -0.19 -3.13 10.48 30.59 0.32 -2.81 15 16 C -0.18 -3.01 10.48 30.59 0.32 -2.69 15 17 H 0.26 15.98 8.31 -92.71 -0.77 15.21 15 18 H 0.37 16.97 5.53 -92.70 -0.51 16.46 15 19 H 0.03 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.06 1.47 8.14 -2.39 -0.02 1.46 15 25 H 0.13 2.00 7.93 -2.39 -0.02 1.98 15 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.12 1.44 8.14 -2.38 -0.02 1.42 15 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 15 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 Total: -1.00 -68.62 250.82 2.63 -65.99 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.54 Total: 16.65 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.32 Total: -16.67 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -1.55 Total: -102.46 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -1.58 Total: -11.78 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -68.62 2.63 -65.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717286495.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.396 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds