Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46895 * 111.00014 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.09007 * 112.84534 * 316.19800 * 12 11 10 14 14 C 1.53782 * 113.61313 * 87.49937 * 12 11 10 15 15 C 1.53789 * 87.07696 * 139.98698 * 14 12 11 16 16 H 1.09007 * 113.68663 * 220.01072 * 15 14 12 17 17 O 1.42893 * 113.61422 * 89.11901 * 15 14 12 18 18 C 1.53778 * 87.08117 * 334.56644 * 15 14 12 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.00901 * 110.99709 * 56.05089 * 10 9 7 23 23 H 1.08999 * 109.47406 * 299.99931 * 11 10 9 24 24 H 1.09006 * 109.47349 * 60.00253 * 11 10 9 25 25 H 1.08994 * 113.61806 * 254.53034 * 14 12 11 26 26 H 1.08995 * 113.61030 * 25.44059 * 14 12 11 27 27 H 0.96700 * 113.99895 * 82.50128 * 17 15 14 28 28 H 1.08997 * 113.61690 * 270.88608 * 18 15 14 29 29 H 1.09003 * 113.68752 * 139.99265 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0013 -2.5790 -0.0106 11 6 5.4697 -2.6181 -0.0163 12 6 5.9411 -4.0737 -0.0218 13 1 5.3844 -4.7015 0.6740 14 6 6.0671 -4.6750 -1.4315 15 6 7.3525 -5.3605 -0.9387 16 1 8.1570 -5.3632 -1.6743 17 8 7.1286 -6.6461 -0.3566 18 6 7.4667 -4.2276 0.0949 19 1 -0.4850 0.8400 -0.0004 20 1 3.8713 -0.6783 -0.8962 21 1 3.8786 -0.6819 0.8837 22 1 3.6225 -3.0937 -0.7915 23 1 5.8433 -2.1123 -0.9066 24 1 5.8500 -2.1160 0.8734 25 1 5.2683 -5.3732 -1.6815 26 1 6.2396 -3.9314 -2.2095 27 1 7.0559 -7.3628 -1.0017 28 1 8.0218 -3.3617 -0.2659 29 1 7.7978 -4.5632 1.0777 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720893768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = -34.168953 kcal Electronic energy + Delta-G solvation = -11093.245780 eV Core-core repulsion = 9016.807754 eV Total energy + Delta-G solvation = -2076.438027 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.42100 -35.76350 -34.20500 -32.21298 -28.45367 -25.75348 -25.28964 -21.89735 -21.01988 -19.49363 -17.15180 -16.71357 -15.45870 -15.27233 -14.22478 -14.13143 -13.78383 -13.05284 -12.75781 -12.40249 -12.21310 -11.82491 -11.51521 -11.13588 -10.71701 -10.59056 -10.28304 -10.03245 -9.83203 -9.52233 -9.23958 -8.58382 -7.43685 -6.04317 -4.02072 3.29102 3.36597 3.39985 4.00748 4.43365 4.56329 4.75997 4.85925 4.94937 5.27987 5.35665 5.64678 5.70408 5.77281 5.86799 5.97545 6.09303 6.21711 6.36208 6.64035 6.82244 7.04157 7.54837 7.64014 7.93936 8.38917 8.68123 9.03933 9.57787 11.09086 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.088319 B = 0.007340 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.956629 B = 3814.032688 C = 4004.609868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.680 5.680 11 C 0.064 3.936 12 C -0.097 4.097 13 H 0.101 0.899 14 C -0.170 4.170 15 C 0.077 3.923 16 H 0.062 0.938 17 O -0.551 6.551 18 C -0.130 4.130 19 H 0.263 0.737 20 H -0.022 1.022 21 H 0.026 0.974 22 H 0.334 0.666 23 H 0.018 0.982 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.378 0.622 28 H 0.091 0.909 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.831 -7.912 -3.353 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.310 5.310 11 C -0.066 4.066 12 C -0.115 4.115 13 H 0.119 0.881 14 C -0.208 4.208 15 C 0.018 3.982 16 H 0.080 0.920 17 O -0.356 6.356 18 C -0.168 4.168 19 H 0.073 0.927 20 H -0.004 1.004 21 H 0.044 0.956 22 H 0.151 0.849 23 H 0.036 0.964 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.225 0.775 28 H 0.109 0.891 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.641 -7.492 -2.105 16.580 hybrid contribution 0.494 0.967 -1.492 1.846 sum 15.135 -6.524 -3.597 16.869 Atomic orbital electron populations 1.69906 1.06152 1.26856 1.51105 1.24920 0.94769 0.98975 0.94767 0.86800 0.80342 0.83810 0.78395 1.20393 1.21135 1.19176 1.21083 0.89008 0.94815 1.50452 0.90310 1.20016 0.96636 0.85200 0.94663 1.60471 1.04529 1.16588 1.49393 1.21943 0.90649 0.94475 0.99484 1.22513 0.94942 0.97104 0.96971 0.88105 1.23718 0.98531 1.00609 0.97927 1.22713 0.96222 0.83600 0.95687 0.91983 1.86476 1.95229 1.16581 1.37360 1.23068 0.97527 0.96551 0.99657 0.92668 1.00437 0.95607 0.84880 0.96394 0.91729 0.90913 0.89717 0.77523 0.89099 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.37 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.98 27.46 -169.99 -4.67 17.31 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 6 H -0.27 -6.46 6.55 56.52 0.37 -6.09 15 7 C -0.52 -15.16 9.87 -34.44 -0.34 -15.50 15 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 15 9 C 0.16 4.10 4.51 -4.97 -0.02 4.07 15 10 N -0.68 -14.67 6.49 -115.05 -0.75 -15.41 15 11 C 0.06 1.12 5.52 -3.83 -0.02 1.10 15 12 C -0.10 -1.41 3.83 -89.81 -0.34 -1.75 15 13 H 0.10 1.65 8.14 -51.92 -0.42 1.23 15 14 C -0.17 -2.10 7.46 -25.91 -0.19 -2.29 15 15 C 0.08 0.85 5.28 -25.92 -0.14 0.71 15 16 H 0.06 0.56 8.14 -51.92 -0.42 0.14 15 17 O -0.55 -6.30 13.59 -35.23 -0.48 -6.78 15 18 C -0.13 -1.57 7.47 -25.92 -0.19 -1.77 15 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 20 H -0.02 -0.55 7.56 -51.93 -0.39 -0.94 15 21 H 0.03 0.67 7.21 -51.93 -0.37 0.29 15 22 H 0.33 6.98 8.72 -39.29 -0.34 6.64 15 23 H 0.02 0.30 7.84 -51.93 -0.41 -0.11 15 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.08 1.00 7.89 -51.93 -0.41 0.59 15 27 H 0.38 2.55 9.12 45.56 0.42 2.97 15 28 H 0.09 0.97 8.10 -51.93 -0.42 0.55 15 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 LS Contribution 245.21 15.07 3.70 3.70 Total: -1.00 -32.34 245.21 -6.41 -38.75 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.64 Total: 3.34 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.35 Total: -13.53 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.03 Total: -42.78 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.48 Total: -6.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.34 -6.41 -38.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720893768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.580 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds