Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46895 * 111.00014 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.09007 * 112.84534 * 316.19800 * 12 11 10 14 14 C 1.53782 * 113.61313 * 87.49937 * 12 11 10 15 15 C 1.53789 * 87.07696 * 139.98698 * 14 12 11 16 16 H 1.09007 * 113.68663 * 220.01072 * 15 14 12 17 17 O 1.42893 * 113.61422 * 89.11901 * 15 14 12 18 18 C 1.53778 * 87.08117 * 334.56644 * 15 14 12 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.00901 * 110.99709 * 56.05089 * 10 9 7 23 23 H 1.08999 * 109.47406 * 299.99931 * 11 10 9 24 24 H 1.09006 * 109.47349 * 60.00253 * 11 10 9 25 25 H 1.08994 * 113.61806 * 254.53034 * 14 12 11 26 26 H 1.08995 * 113.61030 * 25.44059 * 14 12 11 27 27 H 0.96700 * 113.99895 * 82.50128 * 17 15 14 28 28 H 1.08997 * 113.61690 * 270.88608 * 18 15 14 29 29 H 1.09003 * 113.68752 * 139.99265 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0013 -2.5790 -0.0106 11 6 5.4697 -2.6181 -0.0163 12 6 5.9411 -4.0737 -0.0218 13 1 5.3844 -4.7015 0.6740 14 6 6.0671 -4.6750 -1.4315 15 6 7.3525 -5.3605 -0.9387 16 1 8.1570 -5.3632 -1.6743 17 8 7.1286 -6.6461 -0.3566 18 6 7.4667 -4.2276 0.0949 19 1 -0.4850 0.8400 -0.0004 20 1 3.8713 -0.6783 -0.8962 21 1 3.8786 -0.6819 0.8837 22 1 3.6225 -3.0937 -0.7915 23 1 5.8433 -2.1123 -0.9066 24 1 5.8500 -2.1160 0.8734 25 1 5.2683 -5.3732 -1.6815 26 1 6.2396 -3.9314 -2.2095 27 1 7.0559 -7.3628 -1.0017 28 1 8.0218 -3.3617 -0.2659 29 1 7.7978 -4.5632 1.0777 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720893768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = -60.515809 kcal Electronic energy + Delta-G solvation = -11094.388266 eV Core-core repulsion = 9016.807754 eV Total energy + Delta-G solvation = -2077.580512 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.41391 -37.18467 -35.56520 -34.28927 -30.24987 -27.05239 -26.56640 -23.36988 -22.78971 -20.48429 -19.02310 -17.92163 -16.98763 -16.49857 -15.97635 -15.48374 -15.30562 -14.63366 -14.16200 -13.95831 -13.54480 -13.30411 -12.89388 -12.70616 -12.47662 -11.87306 -11.75291 -11.64859 -11.43357 -11.02872 -10.83458 -10.51544 -9.15586 -8.32000 -6.37169 1.33246 1.36179 1.47756 2.32976 3.01613 3.22841 3.41275 3.75136 3.79985 3.90296 4.17240 4.49975 4.59228 4.71880 4.80992 4.86263 4.87758 4.93066 5.06387 5.14228 5.30027 5.48881 5.54407 5.95572 6.55425 6.64780 6.75637 6.93498 7.28107 8.84929 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.088319 B = 0.007340 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.956629 B = 3814.032688 C = 4004.609868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.173 3.827 10 N -0.693 5.693 11 C 0.066 3.934 12 C -0.105 4.105 13 H 0.076 0.924 14 C -0.167 4.167 15 C 0.087 3.913 16 H 0.093 0.907 17 O -0.572 6.572 18 C -0.125 4.125 19 H 0.268 0.732 20 H -0.013 1.013 21 H 0.024 0.976 22 H 0.335 0.665 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.397 0.603 28 H 0.110 0.890 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.281 -7.229 -4.054 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.053 0.947 9 C 0.045 3.955 10 N -0.323 5.323 11 C -0.063 4.063 12 C -0.124 4.124 13 H 0.094 0.906 14 C -0.205 4.205 15 C 0.028 3.972 16 H 0.110 0.890 17 O -0.381 6.381 18 C -0.163 4.163 19 H 0.077 0.923 20 H 0.005 0.995 21 H 0.042 0.958 22 H 0.152 0.848 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.247 0.753 28 H 0.128 0.872 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.109 -6.847 -2.816 18.642 hybrid contribution -0.332 0.638 -1.260 1.451 sum 16.776 -6.210 -4.077 18.347 Atomic orbital electron populations 1.70060 1.08213 1.28331 1.52189 1.25935 0.95712 1.03479 0.93998 0.85594 0.79254 0.78044 0.79275 1.18879 1.20475 1.17486 1.21358 0.91469 0.93452 1.50726 0.94690 1.19770 0.93706 0.87337 0.94720 1.60373 1.07530 1.14603 1.49821 1.22033 0.87685 0.96651 0.99908 1.22450 0.96730 0.94845 0.98338 0.90606 1.23731 0.99403 1.00757 0.96606 1.22673 0.96041 0.83112 0.95419 0.88952 1.86432 1.95244 1.17424 1.38964 1.23102 0.95184 0.97918 1.00120 0.92265 0.99521 0.95809 0.84751 0.94973 0.92015 0.91490 0.88713 0.75264 0.87168 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 15 2 C 0.01 0.37 5.47 84.65 0.46 0.83 15 3 Si 0.96 44.75 27.46 68.60 1.88 46.63 15 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.25 -11.04 6.55 99.48 0.65 -10.39 15 7 C -0.53 -31.92 9.87 25.60 0.25 -31.67 15 8 H 0.03 2.33 8.06 -2.91 -0.02 2.31 15 9 C 0.17 8.61 4.51 85.56 0.39 9.00 15 10 N -0.69 -29.79 6.49 -517.91 -3.36 -33.15 15 11 C 0.07 2.20 5.52 86.31 0.48 2.68 15 12 C -0.10 -2.92 3.83 -10.27 -0.04 -2.96 15 13 H 0.08 2.49 8.14 -2.38 -0.02 2.47 15 14 C -0.17 -3.78 7.46 31.12 0.23 -3.55 15 15 C 0.09 1.65 5.28 31.12 0.16 1.82 15 16 H 0.09 1.27 8.14 -2.38 -0.02 1.25 15 17 O -0.57 -11.83 13.59 -148.98 -2.02 -13.85 15 18 C -0.13 -2.71 7.47 31.12 0.23 -2.48 15 19 H 0.27 15.81 8.31 -92.71 -0.77 15.03 15 20 H -0.01 -0.61 7.56 -2.39 -0.02 -0.63 15 21 H 0.02 1.19 7.21 -2.38 -0.02 1.18 15 22 H 0.34 14.14 8.72 -89.69 -0.78 13.35 15 23 H 0.03 0.99 7.84 -2.39 -0.02 0.97 15 24 H 0.06 2.07 8.14 -2.38 -0.02 2.05 15 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.09 1.96 7.89 -2.39 -0.02 1.94 15 27 H 0.40 4.44 9.12 -74.06 -0.68 3.76 15 28 H 0.11 1.96 8.10 -2.39 -0.02 1.94 15 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 Total: -1.00 -69.97 245.21 -1.41 -71.38 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.38 Total: 15.33 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 2.17 Total: -26.33 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -3.06 Total: -93.15 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -2.02 Total: -13.85 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.97 -1.41 -71.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720893768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.864 kcal (2) G-P(sol) polarization free energy of solvation -69.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds