Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46884 * 179.97438 * 11 10 9 13 13 H 1.08994 * 112.85469 * 316.19159 * 12 11 10 14 14 C 1.53786 * 113.61393 * 87.50674 * 12 11 10 15 15 C 1.53780 * 87.08383 * 139.97711 * 14 12 11 16 16 H 1.08997 * 113.69371 * 89.12086 * 15 14 12 17 17 O 1.42893 * 113.61425 * 220.02112 * 15 14 12 18 18 C 1.53788 * 113.60943 * 184.99832 * 12 11 10 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.00902 * 110.99679 * 303.95249 * 10 9 7 23 23 H 1.08996 * 109.46886 * 300.00078 * 11 10 9 24 24 H 1.08999 * 109.46991 * 59.99411 * 11 10 9 25 25 H 1.08999 * 113.61309 * 254.52592 * 14 12 11 26 26 H 1.09001 * 113.61294 * 25.42867 * 14 12 11 27 27 H 0.96707 * 113.99911 * 277.49290 * 17 15 14 28 28 H 1.09002 * 113.61544 * 334.56971 * 18 12 11 29 29 H 1.08999 * 113.61069 * 105.47606 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 6 2.5305 -6.0429 0.0005 13 1 3.3517 -5.8717 -0.6954 14 6 2.9898 -6.4591 1.4079 15 6 2.9403 -7.9128 0.9088 16 1 3.8739 -8.2545 0.4620 17 8 2.4166 -8.8307 1.8705 18 6 1.9009 -7.4407 -0.1217 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 2.8406 -3.5486 -0.7809 23 1 0.8810 -4.9813 0.8913 24 1 0.8803 -4.9818 -0.8885 25 1 3.9941 -6.1174 1.6583 26 1 2.2603 -6.2402 2.1878 27 1 3.0656 -9.1313 2.5214 28 1 0.8738 -7.4901 0.2399 29 1 2.0262 -7.8914 -1.1062 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720904734.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -44.351476 kcal Electronic energy + Delta-G solvation = -11044.340003 eV Core-core repulsion = 8967.460429 eV Total energy + Delta-G solvation = -2076.879574 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.30516 -35.82030 -34.42764 -32.34390 -27.74671 -25.63000 -24.72353 -22.08466 -21.38847 -19.41936 -17.54754 -16.76302 -15.42091 -14.92099 -14.28875 -13.88547 -13.69432 -13.48565 -12.37504 -12.33307 -11.81250 -11.68179 -11.28226 -11.02617 -10.78265 -10.60981 -10.38599 -10.13091 -10.05644 -9.68649 -8.61249 -8.40361 -7.38215 -6.37145 -4.05951 3.44910 3.47757 3.66313 4.16785 4.53419 4.63173 4.73413 4.86300 4.90827 5.38702 5.40282 5.57469 5.78412 5.80573 5.87708 5.97720 6.07004 6.25053 6.34186 6.62380 6.96042 7.16546 7.59068 7.79328 8.16668 8.47802 8.58338 8.87784 9.66102 11.02735 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.100654 B = 0.006631 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.114526 B = 4221.418912 C = 4318.857286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.074 2.926 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.182 3.818 10 N -0.682 5.682 11 C 0.070 3.930 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.151 4.151 15 C 0.070 3.930 16 H 0.078 0.922 17 O -0.563 6.563 18 C -0.125 4.125 19 H 0.267 0.733 20 H 0.018 0.982 21 H -0.025 1.025 22 H 0.330 0.670 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.374 0.626 28 H 0.088 0.912 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 -13.477 0.630 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.634 4.634 8 H 0.074 0.926 9 C 0.055 3.945 10 N -0.312 5.312 11 C -0.060 4.060 12 C -0.122 4.122 13 H 0.107 0.893 14 C -0.188 4.188 15 C 0.012 3.988 16 H 0.096 0.904 17 O -0.369 6.369 18 C -0.163 4.163 19 H 0.077 0.923 20 H 0.036 0.964 21 H -0.007 1.007 22 H 0.146 0.854 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.221 0.779 28 H 0.107 0.893 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.430 -11.711 0.973 12.945 hybrid contribution 0.369 -1.808 -0.611 1.944 sum 5.799 -13.519 0.361 14.714 Atomic orbital electron populations 1.70791 1.06895 1.30436 1.46906 1.25892 0.96509 1.02811 0.93825 0.83467 0.74762 0.74996 0.76535 1.20807 1.21471 1.21353 1.22011 0.94804 0.91303 1.55292 0.92594 1.19664 0.91287 0.89078 0.94451 1.60548 1.20796 1.00950 1.48951 1.21865 0.94731 0.89795 0.99658 1.22303 0.98818 0.93429 0.97606 0.89261 1.23599 1.02318 0.95174 0.97758 1.23459 0.96784 0.88088 0.90508 0.90432 1.86525 1.41150 1.64547 1.44638 1.23119 0.99625 0.95647 0.97939 0.92295 0.96431 1.00710 0.85398 0.91712 0.96348 0.91362 0.89349 0.77896 0.89302 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.65 55.43 0.76 -27.80 15 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 15 3 Si 1.07 25.72 29.90 -169.99 -5.08 20.64 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.60 -17.50 9.32 -34.44 -0.32 -17.82 15 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 15 9 C 0.18 4.92 4.75 -4.97 -0.02 4.90 15 10 N -0.68 -15.17 6.49 -115.06 -0.75 -15.92 15 11 C 0.07 1.27 5.52 -3.83 -0.02 1.25 15 12 C -0.10 -1.49 3.90 -89.80 -0.35 -1.84 15 13 H 0.09 1.23 8.13 -51.93 -0.42 0.81 15 14 C -0.15 -2.05 7.46 -25.92 -0.19 -2.25 15 15 C 0.07 0.83 5.21 -25.91 -0.14 0.69 15 16 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 17 O -0.56 -6.69 13.67 -35.23 -0.48 -7.17 15 18 C -0.13 -1.60 7.47 -25.91 -0.19 -1.79 15 19 H 0.27 8.33 7.22 -40.82 -0.29 8.04 15 20 H 0.02 0.51 8.01 -51.93 -0.42 0.09 15 21 H -0.02 -0.69 8.01 -51.93 -0.42 -1.11 15 22 H 0.33 6.98 8.72 -39.29 -0.34 6.64 15 23 H 0.06 1.23 7.84 -51.93 -0.41 0.82 15 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.09 1.32 7.90 -51.93 -0.41 0.91 15 27 H 0.37 2.71 9.12 45.56 0.42 3.13 15 28 H 0.09 1.21 8.10 -51.93 -0.42 0.79 15 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 LS Contribution 247.56 15.07 3.73 3.73 Total: -1.00 -32.55 247.56 -6.77 -39.32 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.61 Total: 3.76 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.34 Total: -16.56 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.01 Total: -43.72 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.48 Total: -7.17 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.55 -6.77 -39.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720904734.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.036 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds