Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46884 * 179.97438 * 11 10 9 13 13 H 1.08994 * 112.85469 * 316.19159 * 12 11 10 14 14 C 1.53786 * 113.61393 * 87.50674 * 12 11 10 15 15 C 1.53780 * 87.08383 * 139.97711 * 14 12 11 16 16 H 1.08997 * 113.69371 * 89.12086 * 15 14 12 17 17 O 1.42893 * 113.61425 * 220.02112 * 15 14 12 18 18 C 1.53788 * 113.60943 * 184.99832 * 12 11 10 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.00902 * 110.99679 * 303.95249 * 10 9 7 23 23 H 1.08996 * 109.46886 * 300.00078 * 11 10 9 24 24 H 1.08999 * 109.46991 * 59.99411 * 11 10 9 25 25 H 1.08999 * 113.61309 * 254.52592 * 14 12 11 26 26 H 1.09001 * 113.61294 * 25.42867 * 14 12 11 27 27 H 0.96707 * 113.99911 * 277.49290 * 17 15 14 28 28 H 1.09002 * 113.61544 * 334.56971 * 18 12 11 29 29 H 1.08999 * 113.61069 * 105.47606 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 6 2.5305 -6.0429 0.0005 13 1 3.3517 -5.8717 -0.6954 14 6 2.9898 -6.4591 1.4079 15 6 2.9403 -7.9128 0.9088 16 1 3.8739 -8.2545 0.4620 17 8 2.4166 -8.8307 1.8705 18 6 1.9009 -7.4407 -0.1217 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 2.8406 -3.5486 -0.7809 23 1 0.8810 -4.9813 0.8913 24 1 0.8803 -4.9818 -0.8885 25 1 3.9941 -6.1174 1.6583 26 1 2.2603 -6.2402 2.1878 27 1 3.0656 -9.1313 2.5214 28 1 0.8738 -7.4901 0.2399 29 1 2.0262 -7.8914 -1.1062 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720904734.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = -70.134179 kcal Electronic energy + Delta-G solvation = -11045.458025 eV Core-core repulsion = 8967.460429 eV Total energy + Delta-G solvation = -2077.997596 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.38022 -37.35248 -35.89283 -34.35982 -29.53527 -26.73961 -26.51785 -24.04564 -22.84566 -20.53055 -19.09489 -18.33364 -16.67002 -16.46233 -15.83347 -15.66989 -15.33091 -14.83402 -14.15160 -13.75317 -13.40731 -13.24267 -12.88991 -12.56973 -12.38123 -12.17652 -11.91451 -11.68537 -11.25092 -10.84961 -10.64055 -10.60773 -9.27043 -8.74519 -6.45773 1.53247 1.62417 1.82213 2.55063 3.10499 3.18470 3.44720 3.66298 3.71716 3.97629 4.02450 4.32851 4.48954 4.58144 4.74241 4.78910 4.82416 4.83452 4.96758 5.04996 5.23699 5.47732 5.68410 5.97366 6.33679 6.51270 6.65162 6.92571 7.37397 8.65217 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.100654 B = 0.006631 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.114526 B = 4221.418912 C = 4318.857286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.039 4.039 3 Si 1.127 2.873 4 H -0.283 1.283 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.613 4.613 8 H 0.059 0.941 9 C 0.192 3.808 10 N -0.681 5.681 11 C 0.070 3.930 12 C -0.101 4.101 13 H 0.104 0.896 14 C -0.155 4.155 15 C 0.086 3.914 16 H 0.108 0.892 17 O -0.580 6.580 18 C -0.125 4.125 19 H 0.252 0.748 20 H -0.008 1.008 21 H -0.044 1.044 22 H 0.338 0.662 23 H 0.050 0.950 24 H 0.017 0.983 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.395 0.605 28 H 0.074 0.926 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.948 -14.082 0.348 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.946 3.054 4 H -0.208 1.208 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.651 4.651 8 H 0.077 0.923 9 C 0.063 3.937 10 N -0.311 5.311 11 C -0.060 4.060 12 C -0.120 4.120 13 H 0.122 0.878 14 C -0.193 4.193 15 C 0.027 3.973 16 H 0.126 0.874 17 O -0.389 6.389 18 C -0.163 4.163 19 H 0.062 0.938 20 H 0.010 0.990 21 H -0.027 1.027 22 H 0.155 0.845 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.245 0.755 28 H 0.093 0.907 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.293 -12.370 0.699 14.376 hybrid contribution -0.233 -1.699 -0.495 1.785 sum 7.060 -14.068 0.204 15.742 Atomic orbital electron populations 1.70929 1.08024 1.29631 1.48790 1.27591 0.96524 1.07064 0.92468 0.82826 0.73966 0.70413 0.78155 1.20843 1.19036 1.19427 1.22384 0.95155 0.92455 1.55073 0.92298 1.19386 0.91430 0.90552 0.92289 1.60439 1.20084 1.01206 1.49375 1.21938 0.95778 0.89370 0.98865 1.22280 0.98252 0.92627 0.98828 0.87828 1.23602 1.01942 0.97223 0.96568 1.23373 0.97280 0.86824 0.89804 0.87417 1.86477 1.42705 1.64310 1.45381 1.23102 0.99219 0.94405 0.99580 0.93840 0.98985 1.02699 0.84488 0.93145 0.96500 0.90728 0.91421 0.75519 0.90693 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.65 21.45 0.29 -59.16 15 2 C -0.04 -2.33 5.46 84.65 0.46 -1.87 15 3 Si 1.13 50.81 29.90 68.60 2.05 52.86 15 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.61 -36.18 9.32 25.60 0.24 -35.94 15 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 15 9 C 0.19 10.63 4.75 85.56 0.41 11.04 15 10 N -0.68 -30.38 6.49 -517.95 -3.36 -33.74 15 11 C 0.07 2.58 5.52 86.30 0.48 3.06 15 12 C -0.10 -2.77 3.90 -10.26 -0.04 -2.81 15 13 H 0.10 2.58 8.13 -2.39 -0.02 2.56 15 14 C -0.16 -4.00 7.46 31.12 0.23 -3.76 15 15 C 0.09 1.77 5.21 31.12 0.16 1.93 15 16 H 0.11 1.64 8.14 -2.39 -0.02 1.63 15 17 O -0.58 -12.35 13.67 -148.98 -2.04 -14.38 15 18 C -0.13 -2.93 7.47 31.13 0.23 -2.70 15 19 H 0.25 16.32 7.22 -92.71 -0.67 15.65 15 20 H -0.01 -0.47 8.01 -2.39 -0.02 -0.49 15 21 H -0.04 -2.60 8.01 -2.39 -0.02 -2.62 15 22 H 0.34 14.11 8.72 -89.69 -0.78 13.33 15 23 H 0.05 1.98 7.84 -2.39 -0.02 1.96 15 24 H 0.02 0.63 8.14 -2.39 -0.02 0.61 15 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.07 2.01 7.90 -2.39 -0.02 2.00 15 27 H 0.39 4.64 9.12 -74.05 -0.68 3.96 15 28 H 0.07 1.97 8.10 -2.39 -0.02 1.95 15 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 Total: -1.00 -69.81 247.56 -1.10 -70.92 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.22 Total: 14.56 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 2.17 Total: -31.06 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -3.07 Total: -92.90 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -2.04 Total: -14.38 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Total: -69.81 -1.10 -70.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720904734.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.781 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds