Wall clock time and date at job start Mon Mar 30 2020 02:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 111.00171 * 2 1 4 4 C 1.50701 * 109.61744 * 65.57094 * 3 2 1 5 5 H 1.07995 * 120.00116 * 239.77482 * 4 3 2 6 6 C 1.37876 * 119.99746 * 59.77212 * 4 3 2 7 7 N 1.31516 * 119.99767 * 194.75163 * 6 4 3 8 8 Si 1.86795 * 120.00123 * 14.74870 * 6 4 3 9 9 H 1.48508 * 109.46976 * 84.66969 * 8 6 4 10 10 H 1.48505 * 109.47380 * 204.66249 * 8 6 4 11 11 H 1.48497 * 109.47490 * 324.66893 * 8 6 4 12 12 C 1.53206 * 109.54000 * 305.35402 * 3 2 1 13 13 C 1.53094 * 109.15123 * 183.15769 * 12 3 2 14 14 O 1.42900 * 109.42380 * 57.60379 * 13 12 3 15 15 C 1.42905 * 114.09898 * 298.83777 * 14 13 12 16 16 C 1.53088 * 109.41621 * 61.15580 * 15 14 13 17 17 H 1.08996 * 109.47334 * 66.15304 * 1 2 3 18 18 H 1.09002 * 109.47108 * 186.16153 * 1 2 3 19 19 H 1.09000 * 109.46485 * 306.15713 * 1 2 3 20 20 H 1.00899 * 111.00127 * 123.95649 * 2 1 3 21 21 H 0.97003 * 119.99471 * 179.97438 * 7 6 4 22 22 H 1.08998 * 109.53780 * 63.25313 * 12 3 2 23 23 H 1.08997 * 109.52033 * 303.05175 * 12 3 2 24 24 H 1.09001 * 109.48064 * 297.61713 * 13 12 3 25 25 H 1.09000 * 109.47986 * 177.59251 * 13 12 3 26 26 H 1.08997 * 109.48376 * 181.14067 * 15 14 13 27 27 H 1.09006 * 109.47939 * 301.16261 * 15 14 13 28 28 H 1.09003 * 109.52094 * 62.30130 * 16 15 14 29 29 H 1.09004 * 109.52518 * 182.48515 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6288 2.0541 1.2925 5 1 1.0304 2.9531 1.2774 6 6 2.0571 1.5310 2.4941 7 7 1.5131 1.9388 3.6199 8 14 3.4099 0.2433 2.5230 9 1 4.7339 0.9155 2.4984 10 1 3.2914 -0.5715 3.7589 11 1 3.2800 -0.6379 1.3348 12 6 1.3992 2.1492 -1.1776 13 6 2.0130 3.5512 -1.2158 14 8 3.4342 3.4450 -1.3210 15 6 4.0515 2.7686 -0.2239 16 6 3.5199 1.3351 -0.1457 17 1 -0.3634 0.4155 -0.9399 18 1 -0.3633 -1.0217 0.1103 19 1 -0.3632 0.6063 0.8298 20 1 1.8306 -0.5261 0.7813 21 1 1.8143 1.5705 4.4653 22 1 0.3192 2.2277 -1.0531 23 1 1.6226 1.6283 -2.1086 24 1 1.7551 4.0859 -0.3017 25 1 1.6244 4.0947 -2.0769 26 1 5.1314 2.7482 -0.3706 27 1 3.8205 3.2932 0.7032 28 1 3.7861 0.7977 -1.0559 29 1 3.9564 0.8312 0.7167 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039074219.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:17 Heat of formation + Delta-G solvation = -49.610713 kcal Electronic energy + Delta-G solvation = -12468.507270 eV Core-core repulsion = 10391.399638 eV Total energy + Delta-G solvation = -2077.107632 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.62280 -37.32429 -34.23039 -32.44438 -31.89738 -27.69279 -26.17789 -24.65499 -23.45846 -20.83922 -18.06882 -17.56782 -17.31568 -16.75628 -15.94130 -15.66327 -14.87555 -14.69075 -14.50656 -14.13528 -13.59703 -13.36200 -12.73839 -12.41862 -12.29501 -12.13028 -11.89028 -11.69770 -11.06965 -10.72579 -10.65536 -10.27242 -9.05749 -8.38835 -6.38613 1.24797 1.28947 1.39609 2.22224 2.96052 3.05866 3.64883 4.04490 4.29070 4.30642 4.51155 4.54112 4.66443 4.67937 4.80070 4.82259 5.06972 5.11253 5.12424 5.21201 5.23127 5.37570 5.69323 6.04014 6.33953 6.53599 6.62649 6.70041 7.26388 8.77721 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.022467 C = 0.018969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.713055 B = 1245.949409 C = 1475.750975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.696 5.696 3 C 0.194 3.806 4 C -0.526 4.526 5 H 0.034 0.966 6 C 0.023 3.977 7 N -0.935 5.935 8 Si 0.926 3.074 9 H -0.271 1.271 10 H -0.308 1.308 11 H -0.222 1.222 12 C -0.121 4.121 13 C 0.069 3.931 14 O -0.394 6.394 15 C 0.072 3.928 16 C -0.145 4.145 17 H 0.067 0.933 18 H 0.065 0.935 19 H 0.007 0.993 20 H 0.324 0.676 21 H 0.264 0.736 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -2.075 -7.888 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.329 5.329 3 C 0.104 3.896 4 C -0.566 4.566 5 H 0.052 0.948 6 C -0.176 4.176 7 N -0.574 5.574 8 Si 0.756 3.244 9 H -0.198 1.198 10 H -0.237 1.237 11 H -0.147 1.147 12 C -0.159 4.159 13 C -0.008 4.008 14 O -0.313 6.313 15 C -0.005 4.005 16 C -0.183 4.183 17 H 0.085 0.915 18 H 0.083 0.917 19 H 0.026 0.974 20 H 0.144 0.856 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.814 -2.092 -8.550 9.241 hybrid contribution 0.000 -0.179 2.016 2.024 sum 2.814 -2.271 -6.534 7.468 Atomic orbital electron populations 1.22001 0.88828 1.00320 1.00179 1.61427 1.07997 1.15184 1.48311 1.18939 0.91251 0.86481 0.92932 1.21627 1.32484 1.11427 0.91036 0.94761 1.25744 0.98065 0.98595 0.95199 1.70103 1.42255 1.46254 0.98790 0.86481 0.80560 0.80534 0.76857 1.19775 1.23661 1.14658 1.21996 0.99911 0.96267 0.97774 1.22570 0.80463 0.96279 1.01473 1.87740 1.20679 1.77761 1.45112 1.22474 0.97250 0.91371 0.89387 1.22491 0.97583 0.97744 1.00508 0.91480 0.91659 0.97426 0.85595 0.92656 0.91882 0.91325 0.94674 0.87126 0.87619 0.94416 0.90878 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.82 127.69 1.25 2.68 15 2 N -0.70 -29.57 6.38 -496.12 -3.17 -32.74 15 3 C 0.19 8.58 0.42 2.91 0.00 8.58 15 4 C -0.53 -27.99 5.75 25.60 0.15 -27.84 15 5 H 0.03 2.05 7.15 -2.91 -0.02 2.03 15 6 C 0.02 1.27 5.40 84.65 0.46 1.73 15 7 N -0.93 -56.31 13.96 21.45 0.30 -56.01 15 8 Si 0.93 42.37 23.05 68.60 1.58 43.95 15 9 H -0.27 -12.01 7.09 99.48 0.71 -11.31 15 10 H -0.31 -14.39 7.11 99.48 0.71 -13.68 15 11 H -0.22 -9.18 4.73 99.48 0.47 -8.71 15 12 C -0.12 -4.72 4.35 30.69 0.13 -4.59 15 13 C 0.07 2.57 6.61 72.01 0.48 3.04 15 14 O -0.39 -15.21 10.77 -148.98 -1.60 -16.82 15 15 C 0.07 2.83 6.62 72.01 0.48 3.31 15 16 C -0.15 -5.99 4.45 30.68 0.14 -5.85 15 17 H 0.07 2.36 6.68 -2.39 -0.02 2.35 15 18 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 19 H 0.01 0.33 7.09 -2.39 -0.02 0.31 15 20 H 0.32 14.17 4.50 -89.69 -0.40 13.76 15 21 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 22 H 0.06 2.44 6.68 -2.39 -0.02 2.42 15 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 24 H 0.03 1.47 6.87 -2.39 -0.02 1.45 15 25 H 0.11 3.31 8.14 -2.39 -0.02 3.29 15 26 H 0.11 3.45 8.14 -2.39 -0.02 3.43 15 27 H 0.04 1.66 7.38 -2.38 -0.02 1.64 15 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 29 H 0.04 1.89 2.39 -2.38 -0.01 1.89 15 Total: -1.00 -60.65 214.25 0.70 -59.95 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.50 Total: 20.61 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.08 Total: -18.95 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.87 Total: -88.75 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.60 Total: -16.82 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.58 Total: 43.95 kcal Total: -60.65 0.70 -59.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039074219.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.341 kcal (2) G-P(sol) polarization free energy of solvation -60.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds