Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99634 * 2 1 4 4 H 1.08995 * 110.05887 * 29.96689 * 3 2 1 5 5 C 1.54265 * 110.03491 * 268.54785 * 3 2 1 6 6 C 1.54887 * 104.20056 * 217.10596 * 5 3 2 7 7 C 1.54890 * 102.91108 * 37.84875 * 6 5 3 8 8 C 1.53877 * 110.03296 * 151.38233 * 3 2 1 9 9 H 1.08999 * 110.03493 * 238.56905 * 8 3 2 10 10 N 1.46501 * 110.03146 * 0.02562 * 8 3 2 11 11 C 1.36935 * 120.00161 * 204.99893 * 10 8 3 12 12 H 1.08001 * 119.99683 * 0.02562 * 11 10 8 13 13 C 1.38808 * 120.00148 * 179.97438 * 11 10 8 14 14 N 1.31614 * 119.99997 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99988 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46734 * 60.00222 * 15 13 11 17 17 H 1.48499 * 109.47191 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47380 * 300.00592 * 15 13 11 19 19 H 1.08989 * 109.47615 * 59.99873 * 1 2 3 20 20 H 1.09001 * 109.46434 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47063 * 299.99467 * 1 2 3 22 22 H 1.09004 * 110.48891 * 98.42569 * 5 3 2 23 23 H 1.09006 * 110.48556 * 335.78467 * 5 3 2 24 24 H 1.09002 * 110.75856 * 156.25785 * 6 5 3 25 25 H 1.09006 * 110.75640 * 279.44771 * 6 5 3 26 26 H 1.09003 * 110.48855 * 80.83451 * 7 6 5 27 27 H 1.09003 * 110.48748 * 203.47148 * 7 6 5 28 28 H 0.96998 * 119.99889 * 25.00088 * 10 8 3 29 29 H 0.97008 * 120.00208 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3519 2.0078 0.5114 5 6 2.2586 1.7734 -1.4488 6 6 3.5952 2.5524 -1.3726 7 6 4.4217 1.7232 -0.3585 8 6 3.3839 1.2710 0.6924 9 1 3.3922 1.9564 1.5399 10 7 3.6844 -0.0901 1.1435 11 6 4.5464 -0.2904 2.1884 12 1 5.0045 0.5550 2.6803 13 6 4.8308 -1.5800 2.6162 14 7 4.2722 -2.6102 2.0171 15 14 6.0073 -1.8533 4.0412 16 1 5.4789 -1.1809 5.2552 17 1 6.1416 -3.3094 4.3000 18 1 7.3371 -1.2867 3.7008 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.4536 2.4287 -1.7815 23 1 2.3541 0.9163 -2.1154 24 1 4.0861 2.5734 -2.3456 25 1 3.4318 3.5644 -1.0020 26 1 4.8690 0.8580 -0.8477 27 1 5.1914 2.3420 0.1028 28 1 3.2727 -0.8493 0.7020 29 1 4.4711 -3.5114 2.3158 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050373548.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = -39.037036 kcal Electronic energy + Delta-G solvation = -11750.662029 eV Core-core repulsion = 9674.012906 eV Total energy + Delta-G solvation = -2076.649123 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.54675 -35.47118 -33.37956 -30.45194 -27.68159 -26.60861 -25.43426 -23.03556 -20.25294 -19.18338 -17.29929 -16.05919 -15.33068 -14.53669 -14.30334 -13.97286 -13.28830 -13.06819 -12.63720 -12.09136 -11.41309 -10.97499 -10.94687 -10.73097 -10.57845 -10.50491 -10.28140 -10.11003 -9.90253 -9.47020 -8.94435 -8.75331 -6.76933 -5.61752 -2.89089 3.51006 3.54850 3.56295 4.31740 4.71740 5.12202 5.16268 5.44484 5.61658 5.70850 5.73229 5.76965 5.93792 6.03520 6.10039 6.15343 6.22233 6.35943 6.49141 6.65834 6.73381 6.83577 7.18239 7.74935 7.87009 8.58084 9.69149 10.32731 10.71187 11.60560 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047751 B = 0.012314 C = 0.010421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.233463 B = 2273.232896 C = 2686.344256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.077 3.923 4 H 0.054 0.946 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.143 4.143 8 C 0.175 3.825 9 H 0.051 0.949 10 N -0.710 5.710 11 C -0.237 4.237 12 H 0.067 0.933 13 C -0.015 4.015 14 N -0.929 5.929 15 Si 0.904 3.096 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.287 1.287 19 H 0.030 0.970 20 H 0.080 0.920 21 H 0.034 0.966 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.395 0.605 29 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 8.663 -5.520 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C 0.018 3.982 4 H 0.072 0.928 5 C -0.182 4.182 6 C -0.160 4.160 7 C -0.184 4.184 8 C 0.064 3.936 9 H 0.069 0.931 10 N -0.352 5.352 11 C -0.369 4.369 12 H 0.085 0.915 13 C -0.211 4.211 14 N -0.578 5.578 15 Si 0.736 3.264 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.214 1.214 19 H 0.049 0.951 20 H 0.099 0.901 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.232 0.768 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.085 8.457 -5.353 11.226 hybrid contribution 0.289 -0.161 0.635 0.716 sum -4.796 8.295 -4.719 10.681 Atomic orbital electron populations 1.22680 0.82660 1.02157 0.98725 1.88021 1.18016 1.27040 1.94622 1.23132 0.96112 0.84314 0.94692 0.92792 1.22862 0.97412 0.99998 0.97962 1.22363 0.95946 0.98265 0.99462 1.23213 0.98619 0.99156 0.97375 1.20979 0.89257 0.89740 0.93625 0.93061 1.42278 1.53243 1.01281 1.38446 1.19243 1.18119 0.91915 1.07607 0.91529 1.24727 1.00879 0.95619 0.99872 1.69690 1.47129 0.97626 1.43342 0.86311 0.80949 0.76655 0.82525 1.21445 1.21779 1.21410 0.95149 0.90124 0.94714 0.92632 0.90770 0.92297 0.92219 0.91101 0.92633 0.76815 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.85 101.05 1.10 1.64 15 2 O -0.36 -7.31 8.48 -35.23 -0.30 -7.61 15 3 C 0.08 1.40 3.38 -25.61 -0.09 1.32 15 4 H 0.05 0.89 7.82 -51.93 -0.41 0.48 15 5 C -0.14 -2.23 6.56 -25.07 -0.16 -2.39 15 6 C -0.12 -1.82 6.90 -24.74 -0.17 -1.99 15 7 C -0.14 -2.69 6.56 -24.97 -0.16 -2.86 15 8 C 0.18 3.75 3.55 -66.71 -0.24 3.51 15 9 H 0.05 1.09 8.09 -51.93 -0.42 0.67 15 10 N -0.71 -19.08 4.87 -52.24 -0.25 -19.34 15 11 C -0.24 -6.89 9.96 -15.06 -0.15 -7.04 15 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 15 13 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 15 14 N -0.93 -29.29 13.06 55.49 0.72 -28.57 15 15 Si 0.90 23.06 29.55 -169.99 -5.02 18.04 15 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 17 H -0.29 -7.48 7.11 56.52 0.40 -7.08 15 18 H -0.29 -7.19 7.11 56.52 0.40 -6.78 15 19 H 0.03 0.39 8.14 -51.94 -0.42 -0.03 15 20 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.03 0.50 8.10 -51.93 -0.42 0.08 15 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.07 1.21 8.08 -51.93 -0.42 0.79 15 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.07 1.49 8.05 -51.93 -0.42 1.07 15 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.40 11.49 6.40 -40.82 -0.26 11.23 15 29 H 0.25 7.71 8.31 -40.82 -0.34 7.37 15 LS Contribution 242.05 15.07 3.65 3.65 Total: -1.00 -31.76 242.05 -5.60 -37.37 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.43 Total: 4.82 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 0.03 Total: -8.36 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.47 Total: -47.90 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.30 Total: -7.61 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.76 -5.60 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050373548.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.670 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds