Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99634 * 2 1 4 4 H 1.08995 * 110.05887 * 29.96689 * 3 2 1 5 5 C 1.54265 * 110.03491 * 268.54785 * 3 2 1 6 6 C 1.54887 * 104.20056 * 217.10596 * 5 3 2 7 7 C 1.54890 * 102.91108 * 37.84875 * 6 5 3 8 8 C 1.53877 * 110.03296 * 151.38233 * 3 2 1 9 9 H 1.08999 * 110.03493 * 238.56905 * 8 3 2 10 10 N 1.46501 * 110.03146 * 0.02562 * 8 3 2 11 11 C 1.36935 * 120.00161 * 204.99893 * 10 8 3 12 12 H 1.08001 * 119.99683 * 0.02562 * 11 10 8 13 13 C 1.38808 * 120.00148 * 179.97438 * 11 10 8 14 14 N 1.31614 * 119.99997 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99988 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46734 * 60.00222 * 15 13 11 17 17 H 1.48499 * 109.47191 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47380 * 300.00592 * 15 13 11 19 19 H 1.08989 * 109.47615 * 59.99873 * 1 2 3 20 20 H 1.09001 * 109.46434 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47063 * 299.99467 * 1 2 3 22 22 H 1.09004 * 110.48891 * 98.42569 * 5 3 2 23 23 H 1.09006 * 110.48556 * 335.78467 * 5 3 2 24 24 H 1.09002 * 110.75856 * 156.25785 * 6 5 3 25 25 H 1.09006 * 110.75640 * 279.44771 * 6 5 3 26 26 H 1.09003 * 110.48855 * 80.83451 * 7 6 5 27 27 H 1.09003 * 110.48748 * 203.47148 * 7 6 5 28 28 H 0.96998 * 119.99889 * 25.00088 * 10 8 3 29 29 H 0.97008 * 120.00208 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3519 2.0078 0.5114 5 6 2.2586 1.7734 -1.4488 6 6 3.5952 2.5524 -1.3726 7 6 4.4217 1.7232 -0.3585 8 6 3.3839 1.2710 0.6924 9 1 3.3922 1.9564 1.5399 10 7 3.6844 -0.0901 1.1435 11 6 4.5464 -0.2904 2.1884 12 1 5.0045 0.5550 2.6803 13 6 4.8308 -1.5800 2.6162 14 7 4.2722 -2.6102 2.0171 15 14 6.0073 -1.8533 4.0412 16 1 5.4789 -1.1809 5.2552 17 1 6.1416 -3.3094 4.3000 18 1 7.3371 -1.2867 3.7008 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.4536 2.4287 -1.7815 23 1 2.3541 0.9163 -2.1154 24 1 4.0861 2.5734 -2.3456 25 1 3.4318 3.5644 -1.0020 26 1 4.8690 0.8580 -0.8477 27 1 5.1914 2.3420 0.1028 28 1 3.2727 -0.8493 0.7020 29 1 4.4711 -3.5114 2.3158 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050373548.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = -60.925370 kcal Electronic energy + Delta-G solvation = -11751.611178 eV Core-core repulsion = 9674.012906 eV Total energy + Delta-G solvation = -2077.598272 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.00494 -36.98181 -35.33308 -32.46203 -29.03114 -28.29520 -26.81106 -25.09265 -21.55077 -20.77497 -19.35022 -17.62201 -16.90758 -16.23929 -15.90351 -15.43360 -14.93075 -14.63178 -14.42234 -13.55881 -13.02858 -12.91041 -12.59307 -12.28284 -12.22773 -12.00878 -11.86600 -11.79341 -11.45707 -11.36372 -10.85631 -10.31477 -8.90279 -7.87381 -5.14913 1.46628 1.50836 1.56841 2.58280 2.98233 3.41599 3.79245 3.88440 4.07485 4.36246 4.38979 4.53340 4.57401 4.67296 4.76107 4.83407 4.90495 5.01667 5.11539 5.21226 5.24598 5.43721 5.49669 5.62581 6.31218 6.53432 7.40649 8.24457 8.48433 9.36223 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047751 B = 0.012314 C = 0.010421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.233463 B = 2273.232896 C = 2686.344256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.076 3.924 4 H 0.074 0.926 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.139 4.139 8 C 0.157 3.843 9 H 0.049 0.951 10 N -0.726 5.726 11 C -0.240 4.240 12 H 0.073 0.927 13 C -0.082 4.082 14 N -0.970 5.970 15 Si 0.974 3.026 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.278 1.278 19 H 0.059 0.941 20 H 0.081 0.919 21 H 0.041 0.959 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.381 0.619 29 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 10.548 -5.856 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.180 4.180 8 C 0.048 3.952 9 H 0.067 0.933 10 N -0.367 5.367 11 C -0.372 4.372 12 H 0.091 0.909 13 C -0.274 4.274 14 N -0.621 5.621 15 Si 0.803 3.197 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.204 1.204 19 H 0.077 0.923 20 H 0.100 0.900 21 H 0.060 0.940 22 H 0.109 0.891 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.214 0.786 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.398 10.410 -5.701 13.039 hybrid contribution 0.336 -0.681 0.718 1.045 sum -5.062 9.729 -4.983 12.046 Atomic orbital electron populations 1.22864 0.80425 1.02917 1.00419 1.87965 1.20643 1.28438 1.94982 1.23181 0.94392 0.84232 0.96481 0.90761 1.22818 0.98866 1.00113 0.95586 1.22340 0.94674 0.98589 0.99079 1.23027 0.98503 0.98801 0.97652 1.21378 0.92262 0.87007 0.94566 0.93325 1.42448 1.52999 1.03116 1.38161 1.19674 1.17686 0.92186 1.07680 0.90862 1.25595 1.03279 0.95460 1.03026 1.69874 1.49193 0.97742 1.45301 0.85197 0.78957 0.76141 0.79377 1.20416 1.22223 1.20408 0.92281 0.90025 0.94009 0.89059 0.92166 0.90459 0.89548 0.94131 0.92204 0.78560 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.85 113.37 1.23 2.12 15 2 O -0.40 -16.19 8.48 -148.98 -1.26 -17.45 15 3 C 0.08 2.64 3.38 31.32 0.11 2.75 15 4 H 0.07 2.24 7.82 -2.39 -0.02 2.22 15 5 C -0.14 -3.78 6.56 31.67 0.21 -3.57 15 6 C -0.11 -2.88 6.90 31.88 0.22 -2.66 15 7 C -0.14 -5.12 6.56 31.74 0.21 -4.91 15 8 C 0.16 6.65 3.55 45.78 0.16 6.82 15 9 H 0.05 2.04 8.09 -2.39 -0.02 2.02 15 10 N -0.73 -39.76 4.87 -319.19 -1.55 -41.31 15 11 C -0.24 -14.12 9.96 84.03 0.84 -13.28 15 12 H 0.07 4.09 7.83 -2.91 -0.02 4.07 15 13 C -0.08 -4.94 5.50 84.86 0.47 -4.47 15 14 N -0.97 -62.74 13.06 21.65 0.28 -62.46 15 15 Si 0.97 48.00 29.55 68.60 2.03 50.02 15 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 17 H -0.30 -14.64 7.11 99.48 0.71 -13.94 15 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 15 19 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.04 1.14 8.10 -2.39 -0.02 1.13 15 22 H 0.09 1.93 8.14 -2.38 -0.02 1.91 15 23 H 0.06 1.85 8.08 -2.38 -0.02 1.83 15 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.09 1.88 8.14 -2.38 -0.02 1.86 15 26 H 0.04 1.71 8.05 -2.39 -0.02 1.69 15 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 28 H 0.38 22.85 6.40 -92.71 -0.59 22.25 15 29 H 0.25 15.54 8.31 -92.70 -0.77 14.77 15 Total: -1.00 -69.35 242.05 3.45 -65.90 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.52 Total: 22.51 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 3.44 Total: -17.21 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -1.27 Total: -103.77 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.26 Total: -17.45 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.02 kcal Total: -69.35 3.45 -65.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050373548.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.975 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds