Wall clock time and date at job start Mon Mar 30 2020 02:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46905 * 110.99922 * 176.04894 * 12 2 1 14 14 C 1.46895 * 110.99789 * 300.00188 * 12 2 1 15 15 C 1.53006 * 109.46753 * 170.00090 * 14 12 2 16 16 H 1.08997 * 115.71598 * 331.93820 * 15 14 12 17 17 C 1.53004 * 117.76843 * 185.00134 * 15 14 12 18 18 O 1.42896 * 117.77141 * 118.98728 * 15 14 12 19 19 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 21 21 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 22 22 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 23 23 H 1.08991 * 109.47190 * 59.99892 * 13 12 2 24 24 H 1.09001 * 109.46809 * 180.02562 * 13 12 2 25 25 H 1.08997 * 109.46774 * 299.99652 * 13 12 2 26 26 H 1.08998 * 109.47225 * 289.99542 * 14 12 2 27 27 H 1.09001 * 109.47444 * 49.99844 * 14 12 2 28 28 H 1.08997 * 117.77329 * 359.97438 * 17 15 14 29 29 H 1.08999 * 117.76894 * 146.26038 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0264 2.4210 15 6 1.8628 -0.9043 3.6341 16 1 1.9075 -1.9765 3.4431 17 6 1.3478 -0.4444 4.9995 18 8 2.7281 -0.3689 4.6374 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 0.7081 1.1608 -3.4844 23 1 3.9186 0.2052 1.1591 24 1 3.8210 -1.3116 2.0859 25 1 3.8030 -1.3531 0.3067 26 1 2.0519 0.9346 2.5280 27 1 0.4722 0.1324 2.3564 28 1 0.7826 0.4866 5.0418 29 1 1.0508 -1.2112 5.7149 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085975.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:34 Heat of formation + Delta-G solvation = -1.014883 kcal Electronic energy + Delta-G solvation = -11573.242526 eV Core-core repulsion = 9498.242167 eV Total energy + Delta-G solvation = -2075.000358 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.04867 -36.75078 -32.80217 -29.42228 -28.41995 -25.74914 -24.59103 -23.59699 -21.00947 -19.44289 -16.38851 -16.25163 -15.43856 -14.93139 -14.55380 -13.98328 -13.49026 -12.95416 -12.38766 -11.95929 -11.49330 -11.25125 -11.03562 -10.77669 -10.73211 -10.29594 -10.13763 -10.05754 -9.87783 -9.78281 -8.87144 -8.42700 -7.24054 -6.01878 -4.06536 3.32469 3.36604 3.39487 3.72821 4.38034 4.43401 4.84577 5.15642 5.27531 5.32872 5.54701 5.78020 5.86304 6.11529 6.19354 6.38729 6.47861 6.79758 6.82169 7.02636 7.12377 7.49352 7.68871 7.81746 8.16715 8.29845 8.56690 8.99286 9.58456 11.05073 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.078296 B = 0.009706 C = 0.009003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.529782 B = 2884.261019 C = 3109.198163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.038 3.962 14 C 0.060 3.940 15 C 0.009 3.991 16 H 0.129 0.871 17 C -0.048 4.048 18 O -0.367 6.367 19 H 0.036 0.964 20 H 0.008 0.992 21 H 0.086 0.914 22 H 0.261 0.739 23 H 0.012 0.988 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -2.187 8.609 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.260 5.260 13 C -0.111 4.111 14 C -0.069 4.069 15 C -0.048 4.048 16 H 0.146 0.854 17 C -0.124 4.124 18 O -0.287 6.287 19 H 0.055 0.945 20 H 0.027 0.973 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.673 -2.444 8.531 8.900 hybrid contribution 0.752 0.466 -0.756 1.163 sum 0.078 -1.978 7.775 8.023 Atomic orbital electron populations 1.21870 0.97625 0.99781 0.99931 1.19270 0.92406 0.92061 0.85723 0.98351 1.21112 1.31159 1.12348 0.89709 0.91841 1.24933 0.95185 0.95076 0.99037 1.69881 1.36846 1.23033 1.23559 0.86560 0.79084 0.79748 0.82005 1.20182 1.21364 1.20340 1.62148 1.09579 1.52417 1.01895 1.22214 0.88530 0.99254 1.01075 1.22051 1.01533 0.94089 0.89189 1.23992 0.94946 0.99760 0.86097 0.85351 1.24253 0.86287 1.03254 0.98655 1.91627 1.16307 1.84815 1.35985 0.94488 0.97266 0.89560 0.92906 0.96965 0.93812 0.90523 0.94992 0.88902 0.87637 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.76 37.15 0.33 -2.89 15 2 C 0.21 5.36 2.06 -68.86 -0.14 5.21 15 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 15 4 C -0.50 -13.82 7.93 -34.44 -0.27 -14.09 15 5 H 0.06 1.73 6.39 -52.48 -0.34 1.39 15 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 15 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 15 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 N -0.54 -11.69 4.62 -236.28 -1.09 -12.79 15 13 C 0.04 0.79 9.08 60.07 0.55 1.33 15 14 C 0.06 1.11 5.18 -3.82 -0.02 1.09 15 15 C 0.01 0.15 5.62 -26.73 -0.15 0.00 15 16 H 0.13 1.96 8.14 -51.93 -0.42 1.53 15 17 C -0.05 -0.61 11.41 37.16 0.42 -0.19 15 18 O -0.37 -6.34 14.47 -35.23 -0.51 -6.85 15 19 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 15 21 H 0.09 2.27 6.07 -51.93 -0.32 1.96 15 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 24 H 0.04 0.81 7.17 -51.93 -0.37 0.44 15 25 H 0.08 1.65 6.23 -51.93 -0.32 1.33 15 26 H 0.03 0.62 8.11 -51.93 -0.42 0.20 15 27 H 0.09 1.64 5.83 -51.93 -0.30 1.34 15 28 H 0.11 1.17 8.14 -51.93 -0.42 0.75 15 29 H 0.11 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 239.78 15.07 3.61 3.61 Total: -1.00 -29.30 239.78 -5.83 -35.13 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.06 Total: -2.55 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.62 Total: -8.01 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.47 Total: -37.58 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.51 Total: -6.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.30 -5.83 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085975.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.115 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds