Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46978 * 2 1 4 4 C 1.50698 * 109.47771 * 120.00195 * 2 1 3 5 5 H 1.08003 * 120.00050 * 114.86501 * 4 2 1 6 6 C 1.37878 * 119.99826 * 294.87992 * 4 2 1 7 7 N 1.31516 * 119.99903 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00062 * 359.97438 * 6 4 2 9 9 H 1.48490 * 109.47464 * 90.00457 * 8 6 4 10 10 H 1.48503 * 109.47030 * 210.00799 * 8 6 4 11 11 H 1.48499 * 109.46890 * 330.00180 * 8 6 4 12 12 N 1.46904 * 109.46867 * 240.00377 * 2 1 3 13 13 C 1.48564 * 111.00284 * 174.75361 * 12 2 1 14 14 C 1.54376 * 104.59711 * 200.95815 * 13 12 2 15 15 C 1.54267 * 105.05763 * 23.84932 * 14 13 12 16 16 H 1.09011 * 110.32019 * 118.99816 * 15 14 13 17 17 O 1.42896 * 110.32601 * 241.10140 * 15 14 13 18 18 C 1.48563 * 111.00187 * 59.33455 * 12 2 1 19 19 H 1.09003 * 109.46978 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46440 * 299.99393 * 1 2 3 21 21 H 1.08994 * 109.47581 * 59.99760 * 1 2 3 22 22 H 0.96996 * 119.99822 * 179.97438 * 7 6 4 23 23 H 1.09002 * 110.40987 * 82.17503 * 13 12 2 24 24 H 1.08997 * 110.40932 * 319.74208 * 13 12 2 25 25 H 1.08995 * 110.32384 * 264.95829 * 14 13 12 26 26 H 1.08997 * 110.32065 * 142.74587 * 14 13 12 27 27 H 0.96700 * 113.99863 * 298.55373 * 17 15 14 28 28 H 1.08994 * 110.41281 * 40.25990 * 18 12 2 29 29 H 1.09003 * 110.40655 * 277.82322 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.5833 -1.6343 1.1334 6 6 1.7887 -0.1810 2.4799 7 7 2.2268 -0.8013 3.5537 8 14 0.8363 1.4171 2.6477 9 1 -0.6138 1.1193 2.7642 10 1 1.2923 2.1400 3.8620 11 1 1.0733 2.2626 1.4501 12 7 2.0196 -0.6924 -1.1995 13 6 3.4992 -0.6035 -1.2991 14 6 3.8053 -0.8639 -2.7896 15 6 2.5098 -0.4855 -3.5368 16 1 2.7006 0.3278 -4.2372 17 8 1.9852 -1.6212 -4.2273 18 6 1.5301 -0.0281 -2.4349 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 2.0556 -0.4286 4.4327 23 1 3.9686 -1.3647 -0.6759 24 1 3.8407 0.3901 -1.0088 25 1 4.0409 -1.9160 -2.9495 26 1 4.6314 -0.2353 -3.1218 27 1 2.5781 -1.9800 -4.9016 28 1 1.5634 1.0555 -2.3225 29 1 0.5169 -0.3562 -2.6669 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082666512.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = -40.960328 kcal Electronic energy + Delta-G solvation = -11821.381915 eV Core-core repulsion = 9744.649392 eV Total energy + Delta-G solvation = -2076.732523 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.76165 -35.83376 -33.17391 -31.29497 -28.24404 -27.77220 -24.88908 -21.73700 -20.38882 -19.42910 -17.22504 -16.70334 -15.66400 -14.50590 -14.14753 -13.55107 -13.36174 -13.10777 -12.52668 -12.10396 -12.02491 -11.49355 -11.11196 -10.88862 -10.56367 -10.42163 -10.29240 -10.11480 -9.75669 -9.52394 -9.06580 -8.55632 -7.47304 -6.05559 -4.03945 3.27120 3.36000 3.37540 4.40610 4.44932 4.80499 5.04991 5.11597 5.26039 5.45716 5.69758 6.00415 6.04129 6.13929 6.23849 6.36311 6.47040 6.52202 6.56424 6.76276 6.80666 7.23636 7.57271 7.84106 7.93260 7.97236 8.66325 9.02806 9.56630 11.07561 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064340 B = 0.012163 C = 0.011176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.081123 B = 2301.535911 C = 2504.804910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.169 3.831 3 H 0.001 0.999 4 C -0.502 4.502 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.880 3.120 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.268 1.268 12 N -0.490 5.490 13 C 0.050 3.950 14 C -0.160 4.160 15 C 0.100 3.900 16 H 0.054 0.946 17 O -0.558 6.558 18 C 0.034 3.966 19 H 0.060 0.940 20 H 0.042 0.958 21 H 0.026 0.974 22 H 0.264 0.736 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.370 0.630 28 H 0.045 0.955 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 2.962 -12.335 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.061 3.939 3 H 0.018 0.982 4 C -0.540 4.540 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.710 3.290 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.193 1.193 12 N -0.215 5.215 13 C -0.079 4.079 14 C -0.198 4.198 15 C 0.041 3.959 16 H 0.072 0.928 17 O -0.362 6.362 18 C -0.095 4.095 19 H 0.080 0.920 20 H 0.061 0.939 21 H 0.045 0.955 22 H 0.074 0.926 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.216 0.784 28 H 0.063 0.937 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.465 2.530 -11.661 11.941 hybrid contribution 0.220 1.672 -0.068 1.688 sum 0.684 4.203 -11.729 12.478 Atomic orbital electron populations 1.22130 0.98310 1.01415 0.98282 1.19937 0.91861 0.92621 0.89460 0.98154 1.20924 1.35271 1.09812 0.87995 0.90096 1.24918 0.95527 0.96928 0.95799 1.69885 1.46562 1.39434 0.97959 0.86927 0.80371 0.84481 0.77213 1.20314 1.22145 1.19336 1.65399 1.05164 1.49992 1.00900 1.22838 0.90469 1.00633 0.93911 1.23144 0.97161 1.02108 0.97388 1.22585 0.93334 0.87247 0.92761 0.92842 1.86603 1.47055 1.47695 1.54859 1.23094 0.99470 0.96208 0.90678 0.92048 0.93916 0.95453 0.92649 0.89771 0.94393 0.90535 0.91709 0.78430 0.93705 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.61 37.16 0.32 -2.96 15 2 C 0.17 4.15 1.41 -68.86 -0.10 4.06 15 3 H 0.00 0.03 6.66 -51.93 -0.35 -0.32 15 4 C -0.50 -14.38 8.63 -34.44 -0.30 -14.68 15 5 H 0.08 2.54 7.71 -52.48 -0.40 2.13 15 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 15 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 15 8 Si 0.88 22.07 24.65 -169.99 -4.19 17.88 15 9 H -0.28 -6.77 6.88 56.52 0.39 -6.38 15 10 H -0.29 -7.34 7.11 56.52 0.40 -6.93 15 11 H -0.27 -6.47 6.40 56.52 0.36 -6.11 15 12 N -0.49 -10.74 5.19 -223.40 -1.16 -11.90 15 13 C 0.05 0.97 5.84 -2.18 -0.01 0.96 15 14 C -0.16 -2.38 6.80 -25.35 -0.17 -2.56 15 15 C 0.10 1.50 4.42 -25.35 -0.11 1.39 15 16 H 0.05 0.67 8.14 -51.92 -0.42 0.25 15 17 O -0.56 -8.27 13.27 -35.23 -0.47 -8.73 15 18 C 0.03 0.62 5.06 -2.18 -0.01 0.61 15 19 H 0.06 1.42 8.14 -51.93 -0.42 0.99 15 20 H 0.04 0.99 3.96 -51.93 -0.21 0.79 15 21 H 0.03 0.53 6.93 -51.93 -0.36 0.18 15 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 23 H 0.08 1.76 7.79 -51.93 -0.40 1.36 15 24 H 0.04 0.75 7.89 -51.93 -0.41 0.34 15 25 H 0.08 1.10 7.98 -51.93 -0.41 0.68 15 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 27 H 0.37 3.56 9.11 45.56 0.41 3.98 15 28 H 0.04 0.78 7.98 -51.93 -0.41 0.37 15 29 H 0.08 1.56 7.60 -51.93 -0.39 1.16 15 LS Contribution 230.02 15.07 3.47 3.47 Total: -1.00 -31.91 230.02 -5.45 -37.37 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.39 Total: 0.15 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.48 Total: -11.25 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: -0.39 Total: -38.88 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.47 Total: -8.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.19 Total: 17.88 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -31.91 -5.45 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082666512.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.595 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds