Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 C 1.53792 * 113.60825 * 254.13395 * 13 12 2 15 15 C 1.53956 * 87.01524 * 220.04598 * 14 13 12 16 16 O 1.42904 * 113.73941 * 139.94498 * 15 14 13 17 17 C 1.53776 * 87.11328 * 25.36348 * 15 14 13 18 18 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 19 19 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 20 20 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 21 21 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 22 22 H 1.00892 * 111.00435 * 321.04633 * 12 2 1 23 23 H 1.08997 * 112.84938 * 25.32328 * 13 12 2 24 24 H 1.08996 * 113.61629 * 334.56673 * 14 13 12 25 25 H 1.09005 * 113.61095 * 105.47109 * 14 13 12 26 26 H 1.09004 * 113.53603 * 270.81176 * 15 14 13 27 27 H 0.96703 * 113.99915 * 82.40574 * 16 15 14 28 28 H 1.09004 * 113.61640 * 220.08738 * 17 15 14 29 29 H 1.08998 * 113.61310 * 89.18430 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 0.9669 -0.0077 -3.3802 15 6 2.0313 0.2387 -4.4649 16 8 1.9173 -0.6333 -5.5913 17 6 3.0761 -0.2199 -3.4340 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 0.7090 1.1614 3.4844 22 1 1.4495 -1.4979 -1.4100 23 1 2.1950 1.2655 -2.0508 24 1 0.5727 -1.0238 -3.3781 25 1 0.1846 0.7510 -3.3544 26 1 2.1289 1.2866 -4.7489 27 1 1.2617 -0.3500 -6.2433 28 1 3.9941 0.3675 -3.4517 29 1 3.2595 -1.2943 -3.4467 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084444028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -56.726332 kcal Electronic energy + Delta-G solvation = -11447.277893 eV Core-core repulsion = 9369.861704 eV Total energy + Delta-G solvation = -2077.416188 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.33895 -37.28102 -35.55556 -33.52690 -29.49162 -27.27290 -26.53041 -24.17370 -22.18581 -20.64329 -18.52143 -18.19435 -16.85360 -16.42675 -15.94771 -15.05625 -14.71955 -14.28127 -13.87232 -13.38838 -13.33655 -13.06312 -12.85018 -12.57968 -12.32912 -12.18367 -11.90109 -11.87809 -11.34425 -11.02814 -10.61239 -10.48592 -8.90845 -8.09740 -6.20845 1.41910 1.43665 1.56292 2.44426 3.18294 3.27722 3.69233 3.76483 3.84572 4.02049 4.24680 4.54332 4.74537 4.81580 4.85722 4.92181 5.05073 5.11885 5.22589 5.32995 5.46784 5.70037 5.85319 6.28772 6.68396 6.83582 6.94615 6.96985 7.49467 8.95815 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.088453 B = 0.008679 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.476411 B = 3225.474169 C = 3384.677544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.678 5.678 13 C 0.061 3.939 14 C -0.188 4.188 15 C 0.091 3.909 16 O -0.576 6.576 17 C -0.120 4.120 18 H 0.060 0.940 19 H 0.028 0.972 20 H 0.029 0.971 21 H 0.261 0.739 22 H 0.333 0.667 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.394 0.606 28 H 0.077 0.923 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -0.041 -11.547 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.306 5.306 13 C -0.051 4.051 14 C -0.228 4.228 15 C 0.031 3.969 16 O -0.383 6.383 17 C -0.159 4.159 18 H 0.079 0.921 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.151 0.849 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.244 0.756 28 H 0.095 0.905 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.671 -0.180 -10.912 10.934 hybrid contribution -1.234 0.161 0.592 1.378 sum -0.563 -0.019 -10.320 10.335 Atomic orbital electron populations 1.22242 0.99824 0.99068 1.00120 1.19011 0.90180 0.92592 0.87541 0.97890 1.21524 1.30358 1.12445 0.91276 0.92942 1.25718 0.95462 0.95894 1.01879 1.70018 1.38099 1.24256 1.23917 0.85461 0.78065 0.78589 0.79207 1.19434 1.20679 1.20552 1.60527 1.57482 1.09130 1.03497 1.22829 0.96445 0.96477 0.89305 1.24356 0.98121 1.02233 0.98052 1.23185 0.95625 0.94019 0.84033 1.86485 1.64516 1.52769 1.34573 1.23164 0.97522 1.02041 0.93150 0.92141 0.95310 0.95233 0.93001 0.84941 0.89942 0.90114 0.91087 0.87914 0.75619 0.90475 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.40 8.94 71.98 0.64 -6.75 15 2 C 0.22 11.04 2.57 44.17 0.11 11.15 15 3 H 0.00 0.18 7.47 -2.39 -0.02 0.16 15 4 C -0.52 -29.32 8.84 25.60 0.23 -29.09 15 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 15 6 C 0.01 0.48 5.30 84.65 0.45 0.92 15 7 N -0.92 -53.57 11.32 21.45 0.24 -53.32 15 8 Si 0.96 44.53 29.54 68.60 2.03 46.55 15 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 12 N -0.68 -29.26 6.34 -470.59 -2.99 -32.24 15 13 C 0.06 2.13 3.98 45.44 0.18 2.31 15 14 C -0.19 -5.36 7.43 31.18 0.23 -5.13 15 15 C 0.09 2.23 5.21 31.18 0.16 2.39 15 16 O -0.58 -13.52 13.68 -148.98 -2.04 -15.56 15 17 C -0.12 -3.63 7.71 31.12 0.24 -3.39 15 18 H 0.06 3.27 6.07 -2.39 -0.01 3.25 15 19 H 0.03 1.21 7.94 -2.39 -0.02 1.19 15 20 H 0.03 1.36 8.13 -2.39 -0.02 1.34 15 21 H 0.26 14.35 8.31 -92.71 -0.77 13.58 15 22 H 0.33 13.74 7.95 -89.70 -0.71 13.02 15 23 H 0.08 3.03 7.49 -2.39 -0.02 3.01 15 24 H 0.08 2.40 7.83 -2.39 -0.02 2.38 15 25 H 0.07 1.90 8.14 -2.38 -0.02 1.88 15 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 15 27 H 0.39 5.28 9.12 -74.06 -0.68 4.61 15 28 H 0.08 2.16 8.14 -2.38 -0.02 2.14 15 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -62.84 242.87 -0.75 -63.59 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -0.25 Total: 18.57 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 2.25 Total: -27.59 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.74 Total: -85.56 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -2.04 Total: -15.56 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.84 -0.75 -63.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.863 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds