Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47506 * 2 1 4 4 C 1.50704 * 109.47028 * 240.00341 * 2 1 3 5 5 H 1.07995 * 120.00051 * 240.00103 * 4 2 1 6 6 C 1.37877 * 119.99928 * 59.99794 * 4 2 1 7 7 N 1.31515 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00147 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47178 * 60.00116 * 8 6 4 10 10 H 1.48507 * 109.47351 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47240 * 300.00036 * 8 6 4 12 12 N 1.46895 * 109.47338 * 120.00669 * 2 1 3 13 13 C 1.46906 * 110.99697 * 274.99673 * 12 2 1 14 14 C 1.53786 * 113.61279 * 254.13512 * 13 12 2 15 15 C 1.53962 * 87.01719 * 220.04907 * 14 13 12 16 16 O 1.42901 * 113.74003 * 139.94384 * 15 14 13 17 17 C 1.53781 * 113.61285 * 156.52856 * 13 12 2 18 18 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46755 * 299.99933 * 1 2 3 20 20 H 1.09005 * 109.46934 * 59.99398 * 1 2 3 21 21 H 0.96999 * 120.00692 * 180.02562 * 7 6 4 22 22 H 1.00895 * 111.00396 * 38.94810 * 12 2 1 23 23 H 1.08993 * 112.85276 * 25.33331 * 13 12 2 24 24 H 1.09000 * 113.61666 * 334.56695 * 14 13 12 25 25 H 1.09000 * 113.61138 * 105.47366 * 14 13 12 26 26 H 1.08997 * 113.53543 * 270.80998 * 15 14 13 27 27 H 0.96703 * 113.99976 * 82.39976 * 16 15 14 28 28 H 1.09001 * 113.61695 * 254.52859 * 17 13 12 29 29 H 1.09002 * 113.61213 * 25.34919 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.8256 -2.5200 -4.0079 10 1 1.8267 -0.4195 -5.2206 11 1 3.8062 -1.1207 -4.0084 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 6 3.5132 0.6469 2.7186 15 6 3.0851 0.5095 4.1911 16 8 4.0841 -0.0765 5.0283 17 6 2.0221 -0.4911 3.7077 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8900 21 1 0.7087 1.1616 -3.4843 22 1 1.4496 -1.4980 1.4099 23 1 1.3878 1.0578 2.2606 24 1 4.2745 -0.0722 2.4163 25 1 3.7551 1.6689 2.4268 26 1 2.6655 1.4243 4.6096 27 1 4.7555 0.5479 5.3355 28 1 1.0622 -0.3865 4.2133 29 1 2.3737 -1.5224 3.6760 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084444030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = -33.671057 kcal Electronic energy + Delta-G solvation = -11426.538905 eV Core-core repulsion = 9350.122469 eV Total energy + Delta-G solvation = -2076.416436 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.95909 -35.74134 -34.00056 -31.63561 -27.66623 -25.38993 -25.08965 -22.77843 -20.10940 -19.18902 -17.42164 -16.21125 -15.07876 -14.82734 -14.43182 -13.80860 -13.24417 -12.52624 -12.17386 -12.02233 -11.52701 -11.16968 -11.08784 -10.82504 -10.63379 -10.37871 -10.16909 -10.11120 -9.85831 -9.43898 -8.92889 -8.33524 -7.23200 -5.96032 -3.99128 3.36497 3.39951 3.43795 4.36775 4.48730 4.92750 5.01413 5.15716 5.31763 5.35495 5.58285 5.85545 6.01544 6.19532 6.35476 6.57139 6.67094 6.73837 6.85393 7.12682 7.41803 7.75795 7.79415 7.92591 8.31529 8.57455 8.65836 9.08024 9.66106 11.11121 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.071121 B = 0.008975 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.598393 B = 3118.941357 C = 3293.811168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.670 5.670 13 C 0.066 3.934 14 C -0.152 4.152 15 C 0.071 3.929 16 O -0.562 6.562 17 C -0.132 4.132 18 H 0.028 0.972 19 H 0.004 0.996 20 H 0.088 0.912 21 H 0.260 0.740 22 H 0.327 0.673 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.372 0.628 28 H 0.064 0.936 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 0.642 10.130 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.300 5.300 13 C -0.045 4.045 14 C -0.191 4.191 15 C 0.012 3.988 16 O -0.367 6.367 17 C -0.170 4.170 18 H 0.047 0.953 19 H 0.023 0.977 20 H 0.107 0.893 21 H 0.069 0.931 22 H 0.145 0.855 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.219 0.781 28 H 0.083 0.917 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.237 0.300 9.691 9.950 hybrid contribution -0.423 0.298 -0.624 0.811 sum 1.814 0.598 9.067 9.266 Atomic orbital electron populations 1.22449 1.00759 0.99206 1.00423 1.19225 0.89520 0.94405 0.86662 0.94892 1.21131 1.30173 1.12409 0.89655 0.92017 1.24952 0.95357 0.95215 0.99035 1.69873 1.37383 1.23224 1.23405 0.86560 0.79180 0.79601 0.82016 1.20370 1.21493 1.20303 1.60890 1.57622 1.08519 1.02934 1.22629 0.96068 0.96001 0.89841 1.23765 0.99148 1.01577 0.94587 1.23315 0.89911 0.96076 0.89467 1.86524 1.40868 1.40004 1.69311 1.23326 0.97242 1.00089 0.96368 0.95318 0.97699 0.89295 0.93054 0.85520 0.91787 0.88732 0.92173 0.90713 0.78132 0.91730 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.93 37.16 0.33 -3.78 15 2 C 0.21 5.35 2.43 -68.86 -0.17 5.18 15 3 H 0.03 0.93 7.85 -51.93 -0.41 0.52 15 4 C -0.49 -13.92 8.84 -34.44 -0.30 -14.23 15 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 15 7 N -0.90 -25.98 11.32 55.43 0.63 -25.36 15 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 12 N -0.67 -14.53 6.28 -100.10 -0.63 -15.16 15 13 C 0.07 1.20 3.82 -66.89 -0.26 0.94 15 14 C -0.15 -2.52 7.73 -25.82 -0.20 -2.72 15 15 C 0.07 1.00 5.21 -25.82 -0.13 0.87 15 16 O -0.56 -7.66 13.68 -35.23 -0.48 -8.14 15 17 C -0.13 -2.03 7.50 -25.92 -0.19 -2.23 15 18 H 0.03 0.66 8.13 -51.93 -0.42 0.24 15 19 H 0.00 0.09 7.71 -51.93 -0.40 -0.31 15 20 H 0.09 2.39 6.07 -51.93 -0.32 2.08 15 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.33 6.75 8.30 -39.29 -0.33 6.43 15 23 H 0.06 1.20 7.48 -51.93 -0.39 0.81 15 24 H 0.09 1.72 8.14 -51.93 -0.42 1.29 15 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.37 3.28 9.12 45.56 0.42 3.70 15 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 LS Contribution 243.39 15.07 3.67 3.67 Total: -1.00 -29.99 243.39 -6.36 -36.35 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.50 Total: 6.43 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.02 Total: -14.52 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.00 Total: -40.52 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.48 Total: -8.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.99 -6.36 -36.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.677 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds