Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47506 * 2 1 4 4 C 1.50704 * 109.47028 * 240.00341 * 2 1 3 5 5 H 1.07995 * 120.00051 * 240.00103 * 4 2 1 6 6 C 1.37877 * 119.99928 * 59.99794 * 4 2 1 7 7 N 1.31515 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00147 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47178 * 60.00116 * 8 6 4 10 10 H 1.48507 * 109.47351 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47240 * 300.00036 * 8 6 4 12 12 N 1.46895 * 109.47338 * 120.00669 * 2 1 3 13 13 C 1.46906 * 110.99697 * 274.99673 * 12 2 1 14 14 C 1.53786 * 113.61279 * 254.13512 * 13 12 2 15 15 C 1.53962 * 87.01719 * 220.04907 * 14 13 12 16 16 O 1.42901 * 113.74003 * 139.94384 * 15 14 13 17 17 C 1.53781 * 113.61285 * 156.52856 * 13 12 2 18 18 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46755 * 299.99933 * 1 2 3 20 20 H 1.09005 * 109.46934 * 59.99398 * 1 2 3 21 21 H 0.96999 * 120.00692 * 180.02562 * 7 6 4 22 22 H 1.00895 * 111.00396 * 38.94810 * 12 2 1 23 23 H 1.08993 * 112.85276 * 25.33331 * 13 12 2 24 24 H 1.09000 * 113.61666 * 334.56695 * 14 13 12 25 25 H 1.09000 * 113.61138 * 105.47366 * 14 13 12 26 26 H 1.08997 * 113.53543 * 270.80998 * 15 14 13 27 27 H 0.96703 * 113.99976 * 82.39976 * 16 15 14 28 28 H 1.09001 * 113.61695 * 254.52859 * 17 13 12 29 29 H 1.09002 * 113.61213 * 25.34919 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.8256 -2.5200 -4.0079 10 1 1.8267 -0.4195 -5.2206 11 1 3.8062 -1.1207 -4.0084 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 6 3.5132 0.6469 2.7186 15 6 3.0851 0.5095 4.1911 16 8 4.0841 -0.0765 5.0283 17 6 2.0221 -0.4911 3.7077 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8900 21 1 0.7087 1.1616 -3.4843 22 1 1.4496 -1.4980 1.4099 23 1 1.3878 1.0578 2.2606 24 1 4.2745 -0.0722 2.4163 25 1 3.7551 1.6689 2.4268 26 1 2.6655 1.4243 4.6096 27 1 4.7555 0.5479 5.3355 28 1 1.0622 -0.3865 4.2133 29 1 2.3737 -1.5224 3.6760 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084444030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = -56.916274 kcal Electronic energy + Delta-G solvation = -11427.546893 eV Core-core repulsion = 9350.122469 eV Total energy + Delta-G solvation = -2077.424425 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.26006 -37.29905 -35.56002 -33.57491 -29.49948 -27.24580 -26.62762 -24.18602 -22.04261 -20.53220 -18.62261 -18.19741 -16.82008 -16.32049 -16.02736 -15.24715 -14.88586 -14.35806 -13.84713 -13.32286 -13.25868 -12.97659 -12.84703 -12.59993 -12.25947 -12.17672 -12.00062 -11.64917 -11.40893 -10.99708 -10.62411 -10.48402 -8.97207 -8.09816 -6.21088 1.43166 1.45022 1.52830 2.44193 3.18279 3.30222 3.63006 3.74605 3.99674 4.01481 4.11789 4.54324 4.73224 4.83339 4.86975 4.91145 5.04226 5.07682 5.27876 5.32780 5.50502 5.69323 5.85722 6.29039 6.67239 6.85011 6.94043 6.97466 7.49050 8.95629 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.071121 B = 0.008975 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.598393 B = 3118.941357 C = 3293.811168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.676 5.676 13 C 0.052 3.948 14 C -0.157 4.157 15 C 0.092 3.908 16 O -0.575 6.575 17 C -0.125 4.125 18 H 0.032 0.968 19 H 0.026 0.974 20 H 0.061 0.939 21 H 0.261 0.739 22 H 0.332 0.668 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.394 0.606 28 H 0.085 0.915 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 0.408 11.059 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.059 4.059 14 C -0.196 4.196 15 C 0.032 3.968 16 O -0.383 6.383 17 C -0.163 4.163 18 H 0.051 0.949 19 H 0.045 0.955 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.150 0.850 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.244 0.756 28 H 0.104 0.896 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.409 0.070 10.647 10.916 hybrid contribution -0.436 0.394 -0.864 1.045 sum 1.973 0.464 9.783 9.991 Atomic orbital electron populations 1.22252 0.99894 0.99281 1.00123 1.18966 0.90058 0.92598 0.87688 0.98151 1.21440 1.30518 1.12493 0.91233 0.92936 1.25721 0.95438 0.95882 1.01887 1.69999 1.38008 1.24227 1.24064 0.85565 0.78598 0.78701 0.78442 1.19619 1.20874 1.20006 1.60773 1.57443 1.09188 1.03232 1.22779 0.97197 0.95874 0.90062 1.23762 0.97556 1.01047 0.97189 1.23157 0.89259 0.96465 0.87871 1.86471 1.41558 1.41397 1.68884 1.23244 0.98983 0.99652 0.94431 0.94917 0.95463 0.91998 0.92974 0.84998 0.92178 0.90748 0.91925 0.87728 0.75559 0.89596 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.59 8.93 71.98 0.64 -6.94 15 2 C 0.22 11.15 2.43 44.17 0.11 11.25 15 3 H 0.00 0.03 7.85 -2.39 -0.02 0.01 15 4 C -0.52 -29.49 8.84 25.60 0.23 -29.26 15 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 15 6 C 0.01 0.50 5.30 84.65 0.45 0.94 15 7 N -0.92 -53.83 11.32 21.45 0.24 -53.59 15 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 15 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 15 12 N -0.68 -29.35 6.28 -470.60 -2.96 -32.31 15 13 C 0.05 1.83 3.82 45.44 0.17 2.00 15 14 C -0.16 -5.05 7.73 31.18 0.24 -4.81 15 15 C 0.09 2.32 5.21 31.18 0.16 2.48 15 16 O -0.58 -13.99 13.68 -148.98 -2.04 -16.03 15 17 C -0.13 -3.57 7.50 31.12 0.23 -3.33 15 18 H 0.03 1.51 8.13 -2.39 -0.02 1.49 15 19 H 0.03 1.15 7.71 -2.39 -0.02 1.13 15 20 H 0.06 3.36 6.07 -2.38 -0.01 3.34 15 21 H 0.26 14.50 8.31 -92.71 -0.77 13.73 15 22 H 0.33 13.59 8.30 -89.70 -0.74 12.84 15 23 H 0.06 2.19 7.48 -2.39 -0.02 2.17 15 24 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.11 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.39 5.69 9.12 -74.06 -0.68 5.02 15 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 Total: -1.00 -63.59 243.39 -0.77 -64.35 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.28 Total: 18.60 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 2.24 Total: -27.66 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.71 Total: -85.90 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -2.04 Total: -16.03 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.59 -0.77 -64.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.438 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds