Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46847 * 110.99812 * 2 1 4 4 C 1.53034 * 109.52486 * 174.15668 * 3 2 1 5 5 C 1.53126 * 109.27454 * 59.18079 * 4 3 2 6 6 C 1.53114 * 109.16071 * 302.34640 * 5 4 3 7 7 O 1.42907 * 109.50014 * 297.67406 * 6 5 4 8 8 C 1.50699 * 109.50338 * 177.59859 * 6 5 4 9 9 H 1.07999 * 119.99670 * 359.97438 * 8 6 5 10 10 C 1.37875 * 120.00062 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00004 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00257 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46839 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47297 * 119.99905 * 12 10 8 15 15 H 1.48497 * 109.47443 * 240.00004 * 12 10 8 16 16 C 1.46848 * 111.00135 * 235.79074 * 2 1 3 17 17 H 1.09000 * 109.46775 * 184.20456 * 1 2 3 18 18 H 1.08995 * 109.47474 * 304.20815 * 1 2 3 19 19 H 1.09001 * 109.47046 * 64.21374 * 1 2 3 20 20 H 1.08999 * 109.46634 * 54.14179 * 3 2 1 21 21 H 1.09006 * 109.46422 * 294.18075 * 3 2 1 22 22 H 1.08997 * 109.50792 * 299.24185 * 4 3 2 23 23 H 1.09006 * 109.50471 * 179.11839 * 4 3 2 24 24 H 1.09001 * 109.52438 * 62.24983 * 5 4 3 25 25 H 1.09000 * 109.51793 * 182.37754 * 5 4 3 26 26 H 0.96706 * 113.99817 * 179.97438 * 7 6 5 27 27 H 0.97004 * 120.00478 * 179.97438 * 11 10 8 28 28 H 1.09000 * 109.46321 * 65.82514 * 16 2 1 29 29 H 1.09002 * 109.46191 * 305.85104 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 3.5182 -0.8713 -1.0208 7 8 3.8641 -1.5431 0.1922 8 6 4.0599 -1.6439 -2.1958 9 1 4.7620 -1.1777 -2.8712 10 6 3.6592 -2.9459 -2.4087 11 7 2.8046 -3.5137 -1.5860 12 14 4.3301 -3.9033 -3.8656 13 1 5.2686 -3.0449 -4.6322 14 1 5.0482 -5.1082 -3.3778 15 1 3.2075 -4.3183 -4.7446 16 6 1.9953 -0.7708 -1.1337 17 1 -0.3633 -1.0249 0.0753 18 1 -0.3634 0.5777 0.8498 19 1 -0.3633 0.4471 -0.9253 20 1 1.5634 1.9258 0.8329 21 1 1.7324 1.8609 -0.9376 22 1 3.7814 0.8569 1.0907 23 1 3.9099 2.3514 0.1311 24 1 3.8887 1.0355 -1.9560 25 1 5.1999 0.4725 -0.8910 26 1 3.5156 -2.4428 0.2567 27 1 2.5224 -4.4296 -1.7359 28 1 1.7326 -0.2708 -2.0660 29 1 1.5636 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134367939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = -54.417087 kcal Electronic energy + Delta-G solvation = -12207.337200 eV Core-core repulsion = 10130.021148 eV Total energy + Delta-G solvation = -2077.316052 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.25343 -34.74218 -32.22102 -31.73346 -28.79001 -25.97307 -25.05313 -21.91966 -21.10016 -18.48667 -16.82971 -15.10357 -14.91505 -14.32561 -13.91239 -13.57985 -12.91356 -12.74742 -12.07316 -11.89603 -11.54976 -11.25606 -11.09043 -10.89673 -10.50867 -10.25932 -10.04733 -9.98058 -9.73209 -8.96757 -8.56087 -7.90808 -7.34304 -6.13573 -4.25272 3.23129 3.31871 3.36283 4.33143 4.81632 5.16720 5.67297 5.76081 5.86789 5.98772 6.09355 6.21096 6.30036 6.38593 6.53477 6.66152 6.73446 6.77147 7.02530 7.09975 7.57398 7.63624 7.85911 7.97526 8.12251 8.32981 8.78885 9.44627 9.74630 10.88918 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053662 B = 0.014850 C = 0.013192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.661100 B = 1885.119180 C = 2122.011539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.536 5.536 3 C 0.061 3.939 4 C -0.112 4.112 5 C -0.101 4.101 6 C 0.258 3.742 7 O -0.580 6.580 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.897 5.897 12 Si 0.898 3.102 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.037 3.963 17 H 0.063 0.937 18 H 0.053 0.947 19 H 0.011 0.989 20 H 0.057 0.943 21 H 0.018 0.982 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.377 0.623 27 H 0.266 0.734 28 H 0.010 0.990 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 5.216 1.047 5.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.261 5.261 3 C -0.068 4.068 4 C -0.150 4.150 5 C -0.139 4.139 6 C 0.218 3.782 7 O -0.388 6.388 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.133 4.133 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.210 1.210 16 C -0.090 4.090 17 H 0.082 0.918 18 H 0.072 0.928 19 H 0.030 0.970 20 H 0.075 0.925 21 H 0.036 0.964 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.227 0.773 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.148 5.392 1.619 6.026 hybrid contribution -0.382 -0.701 -1.792 1.962 sum -2.530 4.691 -0.173 5.332 Atomic orbital electron populations 1.22283 0.89477 1.01461 0.98710 1.61999 1.05550 1.12369 1.46151 1.21998 0.96224 0.90109 0.98425 1.21525 0.94084 0.98369 1.01007 1.21521 0.99773 0.96301 0.96256 1.18542 0.88054 0.88028 0.83589 1.86097 1.79117 1.32465 1.41088 1.21854 1.26426 0.97952 1.11299 0.92152 1.25038 0.94203 0.97549 0.96489 1.69617 1.32655 1.14087 1.37408 0.86438 0.78855 0.79838 0.82251 1.19745 1.20776 1.20952 1.23026 0.99796 0.98636 0.87541 0.91800 0.92774 0.97020 0.92451 0.96403 0.90872 0.93461 0.92930 0.92637 0.77327 0.92364 0.97149 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.59 60.07 0.58 1.11 15 2 N -0.54 -11.53 4.79 -242.96 -1.16 -12.69 15 3 C 0.06 1.16 5.46 -3.84 -0.02 1.14 15 4 C -0.11 -2.20 5.94 -26.65 -0.16 -2.36 15 5 C -0.10 -2.27 4.95 -26.61 -0.13 -2.40 15 6 C 0.26 6.63 0.68 -91.70 -0.06 6.57 15 7 O -0.58 -15.70 12.30 -35.23 -0.43 -16.13 15 8 C -0.54 -14.74 8.25 -34.44 -0.28 -15.02 15 9 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 10 C 0.07 1.84 5.22 -17.82 -0.09 1.75 15 11 N -0.90 -24.26 9.70 55.43 0.54 -23.72 15 12 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 13 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 16 C 0.04 0.91 4.18 -3.83 -0.02 0.90 15 17 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 18 H 0.05 0.84 8.09 -51.93 -0.42 0.42 15 19 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 15 20 H 0.06 0.96 8.09 -51.93 -0.42 0.54 15 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.07 1.54 7.80 -51.93 -0.40 1.14 15 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.05 1.25 8.14 -51.93 -0.42 0.82 15 26 H 0.38 10.48 7.14 45.56 0.33 10.80 15 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 15 29 H 0.11 2.81 6.10 -51.93 -0.32 2.49 15 LS Contribution 232.19 15.07 3.50 3.50 Total: -1.00 -27.88 232.19 -6.51 -34.39 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.74 Total: 7.11 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.19 Total: -8.33 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.63 Total: -36.41 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.43 Total: -16.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.88 -6.51 -34.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134367939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.030 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds