Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46847 * 110.99812 * 2 1 4 4 C 1.53034 * 109.52486 * 174.15668 * 3 2 1 5 5 C 1.53126 * 109.27454 * 59.18079 * 4 3 2 6 6 C 1.53114 * 109.16071 * 302.34640 * 5 4 3 7 7 O 1.42907 * 109.50014 * 297.67406 * 6 5 4 8 8 C 1.50699 * 109.50338 * 177.59859 * 6 5 4 9 9 H 1.07999 * 119.99670 * 359.97438 * 8 6 5 10 10 C 1.37875 * 120.00062 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00004 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00257 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46839 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47297 * 119.99905 * 12 10 8 15 15 H 1.48497 * 109.47443 * 240.00004 * 12 10 8 16 16 C 1.46848 * 111.00135 * 235.79074 * 2 1 3 17 17 H 1.09000 * 109.46775 * 184.20456 * 1 2 3 18 18 H 1.08995 * 109.47474 * 304.20815 * 1 2 3 19 19 H 1.09001 * 109.47046 * 64.21374 * 1 2 3 20 20 H 1.08999 * 109.46634 * 54.14179 * 3 2 1 21 21 H 1.09006 * 109.46422 * 294.18075 * 3 2 1 22 22 H 1.08997 * 109.50792 * 299.24185 * 4 3 2 23 23 H 1.09006 * 109.50471 * 179.11839 * 4 3 2 24 24 H 1.09001 * 109.52438 * 62.24983 * 5 4 3 25 25 H 1.09000 * 109.51793 * 182.37754 * 5 4 3 26 26 H 0.96706 * 113.99817 * 179.97438 * 7 6 5 27 27 H 0.97004 * 120.00478 * 179.97438 * 11 10 8 28 28 H 1.09000 * 109.46321 * 65.82514 * 16 2 1 29 29 H 1.09002 * 109.46191 * 305.85104 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 3.5182 -0.8713 -1.0208 7 8 3.8641 -1.5431 0.1922 8 6 4.0599 -1.6439 -2.1958 9 1 4.7620 -1.1777 -2.8712 10 6 3.6592 -2.9459 -2.4087 11 7 2.8046 -3.5137 -1.5860 12 14 4.3301 -3.9033 -3.8656 13 1 5.2686 -3.0449 -4.6322 14 1 5.0482 -5.1082 -3.3778 15 1 3.2075 -4.3183 -4.7446 16 6 1.9953 -0.7708 -1.1337 17 1 -0.3633 -1.0249 0.0753 18 1 -0.3634 0.5777 0.8498 19 1 -0.3633 0.4471 -0.9253 20 1 1.5634 1.9258 0.8329 21 1 1.7324 1.8609 -0.9376 22 1 3.7814 0.8569 1.0907 23 1 3.9099 2.3514 0.1311 24 1 3.8887 1.0355 -1.9560 25 1 5.1999 0.4725 -0.8910 26 1 3.5156 -2.4428 0.2567 27 1 2.5224 -4.4296 -1.7359 28 1 1.7326 -0.2708 -2.0660 29 1 1.5636 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134367939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = -75.017426 kcal Electronic energy + Delta-G solvation = -12208.230498 eV Core-core repulsion = 10130.021148 eV Total energy + Delta-G solvation = -2078.209349 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.03162 -36.61714 -34.18675 -33.54340 -30.66917 -27.59031 -26.98792 -23.63559 -22.84229 -20.30376 -18.86270 -17.10462 -16.68483 -16.04824 -15.63132 -15.27574 -14.77556 -14.51838 -13.88882 -13.52408 -13.21144 -13.06311 -12.88188 -12.57817 -12.36487 -12.21013 -11.92144 -11.67836 -11.49016 -10.83911 -10.58894 -9.93636 -9.00843 -8.16691 -6.37149 1.38516 1.41768 1.52498 2.38582 2.98970 3.33452 4.09644 4.15101 4.30506 4.34576 4.52341 4.63260 4.72222 4.88199 4.90616 4.93098 4.99875 5.09532 5.26328 5.35238 5.56290 5.70558 5.96801 6.09410 6.42771 6.46118 6.71014 7.35885 7.59673 8.83772 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053662 B = 0.014850 C = 0.013192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.661100 B = 1885.119180 C = 2122.011539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.554 5.554 3 C 0.059 3.941 4 C -0.106 4.106 5 C -0.102 4.102 6 C 0.243 3.757 7 O -0.586 6.586 8 C -0.567 4.567 9 H 0.051 0.949 10 C 0.029 3.971 11 N -0.911 5.911 12 Si 0.960 3.040 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.277 1.277 16 C 0.054 3.946 17 H 0.056 0.944 18 H 0.084 0.916 19 H 0.018 0.982 20 H 0.089 0.911 21 H 0.025 0.975 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.369 0.631 27 H 0.269 0.731 28 H -0.002 1.002 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 6.130 1.026 6.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.279 5.279 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.140 4.140 6 C 0.203 3.797 7 O -0.394 6.394 8 C -0.605 4.605 9 H 0.070 0.930 10 C -0.171 4.171 11 N -0.551 5.551 12 Si 0.785 3.215 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.203 1.203 16 C -0.075 4.075 17 H 0.074 0.926 18 H 0.102 0.898 19 H 0.037 0.963 20 H 0.107 0.893 21 H 0.043 0.957 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.079 0.921 28 H 0.016 0.984 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.521 6.324 1.607 6.995 hybrid contribution -0.282 -0.975 -1.758 2.030 sum -2.803 5.349 -0.151 6.041 Atomic orbital electron populations 1.22338 0.87360 1.01762 1.00369 1.61932 1.07656 1.13783 1.44524 1.22111 0.95745 0.88982 1.00062 1.21499 0.94674 0.99661 0.98551 1.21510 0.99350 0.95105 0.98006 1.18797 0.89180 0.89293 0.82447 1.86091 1.79295 1.31986 1.42009 1.22122 1.27127 0.99019 1.12272 0.93021 1.25728 0.94336 0.98247 0.98835 1.69714 1.32803 1.14310 1.38309 0.85494 0.78311 0.78382 0.79308 1.19694 1.20359 1.20250 1.22624 0.98940 0.97698 0.88203 0.92552 0.89751 0.96302 0.89307 0.95716 0.92529 0.89772 0.92379 0.93390 0.78248 0.92109 0.98382 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.59 127.69 1.22 2.24 15 2 N -0.55 -23.01 4.79 -922.57 -4.42 -27.43 15 3 C 0.06 2.07 5.46 86.32 0.47 2.55 15 4 C -0.11 -3.93 5.94 30.65 0.18 -3.75 15 5 C -0.10 -4.52 4.95 30.67 0.15 -4.37 15 6 C 0.24 12.54 0.68 -11.49 -0.01 12.53 15 7 O -0.59 -32.18 12.30 -148.98 -1.83 -34.01 15 8 C -0.57 -31.50 8.25 25.60 0.21 -31.29 15 9 H 0.05 2.87 7.74 -2.91 -0.02 2.85 15 10 C 0.03 1.54 5.22 84.65 0.44 1.98 15 11 N -0.91 -49.72 9.70 21.45 0.21 -49.51 15 12 Si 0.96 42.88 29.54 68.60 2.03 44.91 15 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 14 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 16 C 0.05 2.63 4.18 86.32 0.36 2.99 15 17 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 18 H 0.08 2.34 8.09 -2.39 -0.02 2.32 15 19 H 0.02 0.60 8.14 -2.39 -0.02 0.58 15 20 H 0.09 2.60 8.09 -2.39 -0.02 2.59 15 21 H 0.02 0.85 8.14 -2.38 -0.02 0.83 15 22 H 0.06 2.28 7.80 -2.39 -0.02 2.26 15 23 H 0.08 2.49 8.14 -2.38 -0.02 2.47 15 24 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.37 21.00 7.14 -74.05 -0.53 20.47 15 27 H 0.27 13.89 8.31 -92.71 -0.77 13.12 15 28 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 29 H 0.08 4.23 6.10 -2.39 -0.01 4.22 15 Total: -1.00 -58.81 232.19 -0.39 -59.21 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.59 Total: 23.97 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 3.04 Total: -17.13 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -4.22 Total: -76.94 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.83 Total: -34.01 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -58.81 -0.39 -59.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134367939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.811 kcal (2) G-P(sol) polarization free energy of solvation -58.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds