Wall clock time and date at job start Mon Mar 30 2020 02:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52266 * 2 1 4 4 C 1.53123 * 109.52377 * 120.20514 * 2 1 3 5 5 C 1.53034 * 109.27992 * 177.57276 * 4 2 1 6 6 N 1.46847 * 109.51345 * 300.80438 * 5 4 2 7 7 C 1.46843 * 111.20124 * 61.74903 * 6 5 4 8 8 C 1.53042 * 109.52278 * 298.25596 * 7 6 5 9 9 H 1.08999 * 109.50480 * 299.24136 * 8 7 6 10 10 O 1.42892 * 109.50394 * 179.15895 * 8 7 6 11 11 C 1.34924 * 117.00353 * 90.00326 * 10 8 7 12 12 H 1.08009 * 119.99483 * 359.97438 * 11 10 8 13 13 C 1.38629 * 120.00392 * 179.97438 * 11 10 8 14 14 N 1.31580 * 120.00030 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00258 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46727 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47355 * 119.99760 * 15 13 11 18 18 H 1.48498 * 109.47366 * 240.00474 * 15 13 11 19 19 H 1.09005 * 109.47312 * 180.12063 * 1 2 3 20 20 H 1.09000 * 109.47378 * 300.12437 * 1 2 3 21 21 H 1.09004 * 109.46820 * 60.12659 * 1 2 3 22 22 H 1.08997 * 109.51083 * 57.61870 * 4 2 1 23 23 H 1.08998 * 109.48980 * 297.50802 * 4 2 1 24 24 H 1.09002 * 109.46271 * 180.79158 * 5 4 2 25 25 H 1.08994 * 109.46242 * 60.81457 * 5 4 2 26 26 H 1.00902 * 110.99940 * 185.84650 * 6 5 4 27 27 H 1.08993 * 109.46313 * 58.27251 * 7 6 5 28 28 H 1.09004 * 109.46429 * 178.24601 * 7 6 5 29 29 H 0.97006 * 120.00282 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7261 1.2472 5 6 3.5708 -0.7759 1.2112 6 7 4.0103 -1.4788 -0.0009 7 6 3.5709 -0.7744 -1.2121 8 6 2.0418 -0.7243 -1.2483 9 1 1.6448 -1.7392 -1.2685 10 8 1.6150 -0.0217 -2.4171 11 6 1.4127 -0.7537 -3.5323 12 1 1.5742 -1.8215 -3.5139 13 6 0.9975 -0.1355 -4.7015 14 7 0.8003 1.1653 -4.7237 15 14 0.7167 -1.1491 -6.2453 16 1 1.0056 -2.5774 -5.9589 17 1 -0.6958 -1.0069 -6.6807 18 1 1.6179 -0.6690 -7.3235 19 1 -0.3634 -1.0277 0.0022 20 1 -0.3634 0.5158 0.8889 21 1 -0.3633 0.5119 -0.8912 22 1 1.6448 -1.7410 1.2662 23 1 1.7160 -0.1907 2.1390 24 1 3.9378 -1.3046 2.0909 25 1 3.9672 0.2394 1.2061 26 1 5.0109 -1.6085 -0.0009 27 1 3.9675 0.2408 -1.2058 28 1 3.9379 -1.3021 -2.0925 29 1 0.5094 1.5979 -5.5418 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230197832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:38 Heat of formation + Delta-G solvation = -47.268589 kcal Electronic energy + Delta-G solvation = -11790.520253 eV Core-core repulsion = 9713.514183 eV Total energy + Delta-G solvation = -2077.006070 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51201 -35.47128 -32.87449 -31.58788 -29.19322 -26.57191 -24.47667 -21.96294 -21.52003 -19.14535 -17.44960 -16.29249 -14.89500 -14.28902 -14.00586 -13.85868 -13.65054 -12.90365 -12.55650 -12.11841 -11.57905 -11.38633 -11.28166 -11.23379 -10.85616 -10.40766 -10.27588 -10.07193 -9.65324 -9.39856 -8.98926 -8.13301 -7.88981 -5.91017 -3.53619 3.33112 3.36945 3.41178 4.31231 4.59890 5.21967 5.29380 5.38849 5.42009 5.69859 5.85968 5.89494 5.99763 6.12366 6.14648 6.31852 6.39304 6.41486 6.55612 6.73728 6.97003 7.02900 7.09720 7.40745 7.54320 7.72234 8.47951 9.53185 10.22827 11.30124 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058199 B = 0.011462 C = 0.010398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.991080 B = 2442.222651 C = 2692.155085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.066 0.934 4 C -0.109 4.109 5 C 0.058 3.942 6 N -0.690 5.690 7 C 0.038 3.962 8 C 0.108 3.892 9 H 0.046 0.954 10 O -0.284 6.284 11 C -0.355 4.355 12 H 0.063 0.937 13 C 0.021 3.979 14 N -0.891 5.891 15 Si 0.922 3.078 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.284 1.284 19 H 0.046 0.954 20 H 0.040 0.960 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.026 0.974 26 H 0.335 0.665 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -3.610 9.282 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.072 4.072 6 N -0.322 5.322 7 C -0.091 4.091 8 C 0.048 3.952 9 H 0.064 0.936 10 O -0.198 6.198 11 C -0.434 4.434 12 H 0.080 0.920 13 C -0.176 4.176 14 N -0.534 5.534 15 Si 0.749 3.251 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.210 1.210 19 H 0.065 0.935 20 H 0.059 0.941 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.151 0.849 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.784 -3.710 9.153 10.261 hybrid contribution 0.613 0.060 -0.836 1.038 sum 3.397 -3.650 8.318 9.698 Atomic orbital electron populations 1.21675 0.94933 1.01219 1.01577 1.21195 0.96315 0.99466 0.93714 0.91564 1.21624 0.94518 1.01074 0.97480 1.21906 0.96394 0.96121 0.92745 1.60293 1.17741 1.51910 1.02233 1.22581 0.98982 0.96144 0.91442 1.21686 0.90828 0.95152 0.87559 0.93616 1.85671 1.84804 1.33317 1.16027 1.20937 1.44148 0.90675 0.87658 0.91951 1.24925 0.99126 0.95884 0.97708 1.70031 1.48279 1.08108 1.27000 0.85938 0.77860 0.79134 0.82146 1.19919 1.20950 1.20990 0.93482 0.94056 0.90996 0.91425 0.91899 0.91481 0.95581 0.84853 0.95195 0.90774 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.08 37.16 0.34 -2.22 15 2 C -0.09 -1.70 2.52 -90.49 -0.23 -1.92 15 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 4 C -0.11 -1.68 5.38 -26.65 -0.14 -1.82 15 5 C 0.06 0.84 6.55 -3.84 -0.03 0.81 15 6 N -0.69 -11.23 6.84 -113.82 -0.78 -12.01 15 7 C 0.04 0.76 6.17 -3.83 -0.02 0.74 15 8 C 0.11 2.44 2.22 -26.64 -0.06 2.38 15 9 H 0.05 1.08 7.80 -51.93 -0.41 0.67 15 10 O -0.28 -8.13 8.87 -16.49 -0.15 -8.27 15 11 C -0.35 -10.46 9.78 30.88 0.30 -10.16 15 12 H 0.06 1.76 7.65 -52.48 -0.40 1.36 15 13 C 0.02 0.63 5.49 -17.52 -0.10 0.53 15 14 N -0.89 -28.11 13.67 55.48 0.76 -27.35 15 15 Si 0.92 22.34 29.55 -169.99 -5.02 17.31 15 16 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 19 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.07 1.58 7.76 -51.93 -0.40 1.18 15 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 15 26 H 0.33 4.59 8.90 -39.29 -0.35 4.24 15 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 28 H 0.07 1.56 8.14 -51.93 -0.42 1.13 15 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 LS Contribution 241.14 15.07 3.63 3.63 Total: -1.00 -32.18 241.14 -5.99 -38.17 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.50 Total: 0.17 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 0.06 Total: -11.66 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.02 Total: -39.36 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.15 Total: -8.27 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.18 -5.99 -38.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230197832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.101 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds