Wall clock time and date at job start Mon Mar 30 2020 02:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52266 * 2 1 4 4 C 1.53123 * 109.52377 * 120.20514 * 2 1 3 5 5 C 1.53034 * 109.27992 * 177.57276 * 4 2 1 6 6 N 1.46847 * 109.51345 * 300.80438 * 5 4 2 7 7 C 1.46843 * 111.20124 * 61.74903 * 6 5 4 8 8 C 1.53042 * 109.52278 * 298.25596 * 7 6 5 9 9 H 1.08999 * 109.50480 * 299.24136 * 8 7 6 10 10 O 1.42892 * 109.50394 * 179.15895 * 8 7 6 11 11 C 1.34924 * 117.00353 * 90.00326 * 10 8 7 12 12 H 1.08009 * 119.99483 * 359.97438 * 11 10 8 13 13 C 1.38629 * 120.00392 * 179.97438 * 11 10 8 14 14 N 1.31580 * 120.00030 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00258 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46727 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47355 * 119.99760 * 15 13 11 18 18 H 1.48498 * 109.47366 * 240.00474 * 15 13 11 19 19 H 1.09005 * 109.47312 * 180.12063 * 1 2 3 20 20 H 1.09000 * 109.47378 * 300.12437 * 1 2 3 21 21 H 1.09004 * 109.46820 * 60.12659 * 1 2 3 22 22 H 1.08997 * 109.51083 * 57.61870 * 4 2 1 23 23 H 1.08998 * 109.48980 * 297.50802 * 4 2 1 24 24 H 1.09002 * 109.46271 * 180.79158 * 5 4 2 25 25 H 1.08994 * 109.46242 * 60.81457 * 5 4 2 26 26 H 1.00902 * 110.99940 * 185.84650 * 6 5 4 27 27 H 1.08993 * 109.46313 * 58.27251 * 7 6 5 28 28 H 1.09004 * 109.46429 * 178.24601 * 7 6 5 29 29 H 0.97006 * 120.00282 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7261 1.2472 5 6 3.5708 -0.7759 1.2112 6 7 4.0103 -1.4788 -0.0009 7 6 3.5709 -0.7744 -1.2121 8 6 2.0418 -0.7243 -1.2483 9 1 1.6448 -1.7392 -1.2685 10 8 1.6150 -0.0217 -2.4171 11 6 1.4127 -0.7537 -3.5323 12 1 1.5742 -1.8215 -3.5139 13 6 0.9975 -0.1355 -4.7015 14 7 0.8003 1.1653 -4.7237 15 14 0.7167 -1.1491 -6.2453 16 1 1.0056 -2.5774 -5.9589 17 1 -0.6958 -1.0069 -6.6807 18 1 1.6179 -0.6690 -7.3235 19 1 -0.3634 -1.0277 0.0022 20 1 -0.3634 0.5158 0.8889 21 1 -0.3633 0.5119 -0.8912 22 1 1.6448 -1.7410 1.2662 23 1 1.7160 -0.1907 2.1390 24 1 3.9378 -1.3046 2.0909 25 1 3.9672 0.2394 1.2061 26 1 5.0109 -1.6085 -0.0009 27 1 3.9675 0.2408 -1.2058 28 1 3.9379 -1.3021 -2.0925 29 1 0.5094 1.5979 -5.5418 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230197832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:38 Heat of formation + Delta-G solvation = -71.348419 kcal Electronic energy + Delta-G solvation = -11791.564433 eV Core-core repulsion = 9713.514183 eV Total energy + Delta-G solvation = -2078.050249 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11494 -37.35441 -34.42170 -33.71447 -30.73925 -28.13161 -26.66055 -23.53302 -22.95688 -20.74150 -19.56347 -17.96748 -16.73754 -15.96516 -15.63319 -15.54917 -15.06141 -14.61539 -14.39672 -13.55570 -13.43232 -13.25341 -12.92598 -12.77077 -12.54339 -12.10479 -11.98995 -11.66445 -11.33538 -11.24528 -10.91595 -10.13318 -9.43074 -8.16322 -5.84329 1.38914 1.44054 1.54957 2.32797 3.15054 3.22014 3.74995 3.91921 3.93919 4.20864 4.31800 4.46639 4.58037 4.61537 4.70662 4.84272 4.92732 5.04805 5.07068 5.10203 5.21051 5.35895 5.47509 5.50821 5.99857 6.23660 6.51907 7.27415 8.09457 9.08706 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058199 B = 0.011462 C = 0.010398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.991080 B = 2442.222651 C = 2692.155085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 H 0.053 0.947 4 C -0.101 4.101 5 C 0.055 3.945 6 N -0.687 5.687 7 C 0.050 3.950 8 C 0.097 3.903 9 H 0.032 0.968 10 O -0.323 6.323 11 C -0.367 4.367 12 H 0.067 0.933 13 C -0.043 4.043 14 N -0.941 5.941 15 Si 1.001 2.999 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.276 1.276 19 H 0.051 0.949 20 H 0.075 0.925 21 H 0.026 0.974 22 H 0.069 0.931 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.029 0.971 26 H 0.352 0.648 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -4.863 10.440 12.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.074 4.074 6 N -0.321 5.321 7 C -0.080 4.080 8 C 0.038 3.962 9 H 0.050 0.950 10 O -0.237 6.237 11 C -0.446 4.446 12 H 0.084 0.916 13 C -0.235 4.235 14 N -0.586 5.586 15 Si 0.824 3.176 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.201 1.201 19 H 0.070 0.930 20 H 0.094 0.906 21 H 0.046 0.954 22 H 0.087 0.913 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.047 0.953 26 H 0.171 0.829 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.244 -4.983 10.348 11.935 hybrid contribution 0.503 0.448 -1.083 1.275 sum 3.747 -4.535 9.266 10.975 Atomic orbital electron populations 1.21611 0.94817 1.01366 1.01033 1.21250 0.96538 0.98882 0.94040 0.92881 1.21621 0.95177 1.00896 0.96222 1.22067 0.95748 0.96753 0.92860 1.60236 1.19217 1.51280 1.01367 1.22250 0.97034 0.95686 0.93000 1.22019 0.92563 0.94509 0.87072 0.94951 1.85610 1.85570 1.35197 1.17365 1.21337 1.43783 0.90996 0.88458 0.91581 1.26141 0.98682 0.97254 1.01434 1.70200 1.49751 1.10352 1.28292 0.84755 0.77985 0.77911 0.76994 1.18301 1.20145 1.20129 0.92983 0.90567 0.95444 0.91269 0.88644 0.87748 0.95304 0.82858 0.96382 0.92440 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.08 71.98 0.65 -4.22 15 2 C -0.09 -3.35 2.52 -10.71 -0.03 -3.38 15 3 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 4 C -0.10 -2.81 5.38 30.65 0.16 -2.64 15 5 C 0.05 1.39 6.55 86.32 0.57 1.96 15 6 N -0.69 -20.97 6.84 -514.02 -3.52 -24.49 15 7 C 0.05 2.03 6.17 86.33 0.53 2.57 15 8 C 0.10 4.49 2.22 30.65 0.07 4.56 15 9 H 0.03 1.55 7.80 -2.39 -0.02 1.53 15 10 O -0.32 -19.16 8.87 -81.93 -0.73 -19.88 15 11 C -0.37 -22.19 9.78 67.91 0.66 -21.52 15 12 H 0.07 3.81 7.65 -2.91 -0.02 3.79 15 13 C -0.04 -2.56 5.49 84.82 0.47 -2.09 15 14 N -0.94 -61.02 13.67 21.61 0.30 -60.72 15 15 Si 1.00 46.23 29.55 68.60 2.03 48.26 15 16 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 19 H 0.05 1.84 8.14 -2.38 -0.02 1.82 15 20 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.03 1.23 7.76 -2.38 -0.02 1.21 15 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.03 0.74 8.14 -2.39 -0.02 0.72 15 26 H 0.35 8.78 8.90 -89.69 -0.80 7.99 15 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 28 H 0.06 2.46 8.14 -2.38 -0.02 2.44 15 29 H 0.26 15.63 8.31 -92.70 -0.77 14.85 15 Total: -1.00 -71.38 241.14 1.48 -69.90 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.32 Total: 11.70 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.09 Total: -24.77 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.22 Total: -85.21 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.73 Total: -19.88 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -71.38 1.48 -69.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230197832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.447 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds