Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99603 * 2 1 4 4 H 1.08998 * 110.43586 * 27.45938 * 3 2 1 5 5 C 1.54890 * 110.48896 * 264.77467 * 3 2 1 6 6 C 1.54882 * 102.75186 * 203.38303 * 5 3 2 7 7 C 1.54266 * 104.19498 * 37.94222 * 6 5 3 8 8 H 1.08999 * 110.07207 * 95.70241 * 7 6 5 9 9 N 1.46498 * 110.03002 * 217.10449 * 7 6 5 10 10 C 1.36935 * 120.00239 * 272.16540 * 9 7 6 11 11 H 1.08004 * 120.00069 * 0.02562 * 10 9 7 12 12 C 1.38811 * 120.00368 * 180.02562 * 10 9 7 13 13 N 1.31624 * 119.99540 * 359.72375 * 12 10 9 14 14 Si 1.86800 * 120.00451 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72253 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72375 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72186 * 14 12 10 18 18 C 1.53870 * 106.59967 * 336.39195 * 7 6 5 19 19 H 1.09004 * 109.47296 * 299.99667 * 1 2 3 20 20 H 1.08996 * 109.47517 * 60.00149 * 1 2 3 21 21 H 1.09009 * 109.46900 * 180.02562 * 1 2 3 22 22 H 1.09003 * 110.75523 * 321.69951 * 5 3 2 23 23 H 1.09007 * 110.75345 * 84.87798 * 5 3 2 24 24 H 1.08998 * 110.48461 * 279.26570 * 6 5 3 25 25 H 1.08998 * 110.48751 * 156.62333 * 6 5 3 26 26 H 0.97004 * 119.99747 * 92.17280 * 9 7 6 27 27 H 0.97000 * 120.00481 * 0.27542 * 13 12 10 28 28 H 1.09001 * 110.03517 * 119.28304 * 18 7 6 29 29 H 1.09006 * 110.03257 * 240.71488 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3369 2.0217 0.4710 5 6 2.3514 1.7470 -1.4449 6 6 3.4599 2.8063 -1.2259 7 6 4.2949 2.2439 -0.0569 8 1 5.1572 1.6992 -0.4412 9 7 4.7386 3.3355 0.8135 10 6 5.9105 3.9914 0.5459 11 1 6.5075 3.7042 -0.3071 12 6 6.3312 5.0254 1.3710 13 7 5.6009 5.3790 2.4074 14 14 7.9295 5.9206 1.0056 15 1 8.1480 6.9792 2.0239 16 1 9.0576 4.9555 1.0448 17 1 7.8536 6.5387 -0.3425 18 6 3.3731 1.2897 0.7225 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 2.7298 0.9064 -2.0265 23 1 1.4808 2.1893 -1.9294 24 1 3.0216 3.7666 -0.9543 25 1 4.0746 2.9058 -2.1205 26 1 4.2023 3.5937 1.5794 27 1 4.7708 4.9145 2.5969 28 1 3.7876 0.2816 0.7157 29 1 3.2559 1.6388 1.7484 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234851252.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -45.416147 kcal Electronic energy + Delta-G solvation = -11462.923991 eV Core-core repulsion = 9385.998249 eV Total energy + Delta-G solvation = -2076.925742 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.71519 -36.22999 -33.52622 -30.19748 -28.32384 -26.64898 -25.39723 -23.12243 -20.39119 -19.51025 -17.47945 -16.50525 -15.60686 -14.82096 -14.61110 -14.09794 -13.57550 -13.02977 -12.99601 -12.18382 -11.61928 -11.36394 -11.15124 -10.80708 -10.62047 -10.54882 -10.30415 -10.03485 -9.92637 -9.36295 -9.11647 -8.86912 -7.00376 -6.07958 -3.07319 3.53323 3.56985 3.74407 3.93474 4.69845 5.00903 5.02899 5.29233 5.35849 5.37851 5.59413 5.62539 5.71201 5.86653 6.02935 6.06320 6.10999 6.24304 6.32876 6.46141 6.57859 6.84735 7.05021 7.40241 7.84858 8.77938 9.25853 10.12113 10.27427 11.40556 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.092351 B = 0.008517 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.117374 B = 3286.825355 C = 3419.102326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.083 3.917 4 H 0.063 0.937 5 C -0.142 4.142 6 C -0.139 4.139 7 C 0.181 3.819 8 H 0.054 0.946 9 N -0.734 5.734 10 C -0.330 4.330 11 H 0.065 0.935 12 C -0.046 4.046 13 N -0.945 5.945 14 Si 1.080 2.920 15 H -0.285 1.285 16 H -0.295 1.295 17 H -0.296 1.296 18 C -0.127 4.127 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.366 0.634 27 H 0.254 0.746 28 H 0.072 0.928 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -7.902 -5.661 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.025 3.975 4 H 0.082 0.918 5 C -0.180 4.180 6 C -0.180 4.180 7 C 0.071 3.929 8 H 0.072 0.928 9 N -0.376 5.376 10 C -0.461 4.461 11 H 0.083 0.917 12 C -0.244 4.244 13 N -0.591 5.591 14 Si 0.911 3.089 15 H -0.211 1.211 16 H -0.223 1.223 17 H -0.223 1.223 18 C -0.166 4.166 19 H 0.057 0.943 20 H 0.056 0.944 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.200 0.800 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.792 -6.890 -5.308 11.036 hybrid contribution -1.480 -0.927 -0.407 1.793 sum -8.273 -7.817 -5.715 12.736 Atomic orbital electron populations 1.22720 0.81917 1.02131 0.99724 1.87905 1.18995 1.28618 1.95004 1.23102 0.94946 0.83404 0.96028 0.91845 1.22929 0.99066 0.99515 0.96518 1.23072 0.96656 0.98026 1.00261 1.20717 0.93937 0.88460 0.89829 0.92761 1.42578 1.25554 1.38450 1.31060 1.20080 0.99255 1.15136 1.11660 0.91743 1.25770 1.05337 0.97661 0.95592 1.70883 1.15370 1.43901 1.28949 0.83241 0.74422 0.76045 0.75203 1.21067 1.22278 1.22305 1.22550 0.93673 1.00824 0.99513 0.94297 0.94369 0.90121 0.91106 0.92527 0.91425 0.92351 0.80008 0.93450 0.90954 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 15 2 O -0.39 -5.91 10.41 -35.23 -0.37 -6.28 15 3 C 0.08 1.32 3.35 -25.07 -0.08 1.24 15 4 H 0.06 0.98 7.82 -51.93 -0.41 0.57 15 5 C -0.14 -2.20 6.62 -24.74 -0.16 -2.37 15 6 C -0.14 -2.60 6.53 -25.08 -0.16 -2.76 15 7 C 0.18 3.78 3.55 -66.82 -0.24 3.55 15 8 H 0.05 1.17 8.08 -51.93 -0.42 0.75 15 9 N -0.73 -18.81 5.08 -52.35 -0.27 -19.07 15 10 C -0.33 -9.44 9.96 -15.06 -0.15 -9.59 15 11 H 0.06 1.81 7.83 -52.48 -0.41 1.40 15 12 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 15 13 N -0.95 -29.59 13.70 55.49 0.76 -28.83 15 14 Si 1.08 26.23 29.92 -169.99 -5.09 21.15 15 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 16 H -0.30 -6.86 7.11 56.52 0.40 -6.46 15 17 H -0.30 -6.86 7.11 56.52 0.40 -6.46 15 18 C -0.13 -2.30 6.33 -25.61 -0.16 -2.46 15 19 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 15 20 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 15 21 H 0.08 0.76 8.14 -51.92 -0.42 0.33 15 22 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 23 H 0.06 0.79 8.14 -51.92 -0.42 0.36 15 24 H 0.07 1.36 8.05 -51.93 -0.42 0.94 15 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 26 H 0.37 9.62 6.35 -40.82 -0.26 9.36 15 27 H 0.25 7.84 6.77 -40.82 -0.28 7.56 15 28 H 0.07 1.26 8.07 -51.93 -0.42 0.85 15 29 H 0.07 1.30 7.62 -51.93 -0.40 0.91 15 LS Contribution 242.52 15.07 3.65 3.65 Total: -1.00 -31.43 242.52 -5.60 -37.03 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.33 Total: 4.75 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 0.04 Total: -12.40 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.49 Total: -47.90 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.37 Total: -6.28 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.15 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.43 -5.60 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234851252.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.390 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds