Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99603 * 2 1 4 4 H 1.08998 * 110.43586 * 27.45938 * 3 2 1 5 5 C 1.54890 * 110.48896 * 264.77467 * 3 2 1 6 6 C 1.54882 * 102.75186 * 203.38303 * 5 3 2 7 7 C 1.54266 * 104.19498 * 37.94222 * 6 5 3 8 8 H 1.08999 * 110.07207 * 95.70241 * 7 6 5 9 9 N 1.46498 * 110.03002 * 217.10449 * 7 6 5 10 10 C 1.36935 * 120.00239 * 272.16540 * 9 7 6 11 11 H 1.08004 * 120.00069 * 0.02562 * 10 9 7 12 12 C 1.38811 * 120.00368 * 180.02562 * 10 9 7 13 13 N 1.31624 * 119.99540 * 359.72375 * 12 10 9 14 14 Si 1.86800 * 120.00451 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72253 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72375 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72186 * 14 12 10 18 18 C 1.53870 * 106.59967 * 336.39195 * 7 6 5 19 19 H 1.09004 * 109.47296 * 299.99667 * 1 2 3 20 20 H 1.08996 * 109.47517 * 60.00149 * 1 2 3 21 21 H 1.09009 * 109.46900 * 180.02562 * 1 2 3 22 22 H 1.09003 * 110.75523 * 321.69951 * 5 3 2 23 23 H 1.09007 * 110.75345 * 84.87798 * 5 3 2 24 24 H 1.08998 * 110.48461 * 279.26570 * 6 5 3 25 25 H 1.08998 * 110.48751 * 156.62333 * 6 5 3 26 26 H 0.97004 * 119.99747 * 92.17280 * 9 7 6 27 27 H 0.97000 * 120.00481 * 0.27542 * 13 12 10 28 28 H 1.09001 * 110.03517 * 119.28304 * 18 7 6 29 29 H 1.09006 * 110.03257 * 240.71488 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3369 2.0217 0.4710 5 6 2.3514 1.7470 -1.4449 6 6 3.4599 2.8063 -1.2259 7 6 4.2949 2.2439 -0.0569 8 1 5.1572 1.6992 -0.4412 9 7 4.7386 3.3355 0.8135 10 6 5.9105 3.9914 0.5459 11 1 6.5075 3.7042 -0.3071 12 6 6.3312 5.0254 1.3710 13 7 5.6009 5.3790 2.4074 14 14 7.9295 5.9206 1.0056 15 1 8.1480 6.9792 2.0239 16 1 9.0576 4.9555 1.0448 17 1 7.8536 6.5387 -0.3425 18 6 3.3731 1.2897 0.7225 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 2.7298 0.9064 -2.0265 23 1 1.4808 2.1893 -1.9294 24 1 3.0216 3.7666 -0.9543 25 1 4.0746 2.9058 -2.1205 26 1 4.2023 3.5937 1.5794 27 1 4.7708 4.9145 2.5969 28 1 3.7876 0.2816 0.7157 29 1 3.2559 1.6388 1.7484 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234851252.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -66.776271 kcal Electronic energy + Delta-G solvation = -11463.850235 eV Core-core repulsion = 9385.998249 eV Total energy + Delta-G solvation = -2077.851986 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.05995 -37.70535 -35.43909 -32.12564 -29.69736 -28.05955 -26.70669 -25.22103 -21.70571 -21.13213 -19.54752 -17.78335 -17.06794 -16.35654 -16.03377 -15.75399 -15.40782 -14.48743 -14.31277 -13.56222 -13.35906 -12.77254 -12.60480 -12.44431 -12.25843 -12.15543 -11.87428 -11.65817 -11.56196 -11.24425 -10.92205 -10.48252 -9.12150 -8.39617 -5.33151 1.58470 1.68617 1.85004 2.71269 2.81794 3.39138 3.62496 3.65567 3.77885 4.19674 4.42861 4.44121 4.50907 4.53403 4.59976 4.70709 4.75836 4.85635 4.90822 5.03787 5.13861 5.31759 5.43381 5.61888 6.28400 6.49242 7.09661 7.99839 8.11650 9.12481 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.092351 B = 0.008517 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.117374 B = 3286.825355 C = 3419.102326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.090 3.910 4 H 0.069 0.931 5 C -0.128 4.128 6 C -0.133 4.133 7 C 0.171 3.829 8 H 0.045 0.955 9 N -0.747 5.747 10 C -0.332 4.332 11 H 0.066 0.934 12 C -0.105 4.105 13 N -0.977 5.977 14 Si 1.128 2.872 15 H -0.293 1.293 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.122 4.122 19 H 0.044 0.956 20 H 0.050 0.950 21 H 0.101 0.899 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.359 0.641 27 H 0.243 0.757 28 H 0.077 0.923 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 -8.621 -6.877 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.033 3.967 4 H 0.087 0.913 5 C -0.166 4.166 6 C -0.173 4.173 7 C 0.062 3.938 8 H 0.063 0.937 9 N -0.389 5.389 10 C -0.463 4.463 11 H 0.084 0.916 12 C -0.296 4.296 13 N -0.625 5.625 14 Si 0.953 3.047 15 H -0.219 1.219 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.160 4.160 19 H 0.063 0.937 20 H 0.069 0.931 21 H 0.120 0.880 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.192 0.808 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.353 -7.661 -6.565 12.484 hybrid contribution -1.381 -0.801 -0.051 1.597 sum -8.733 -8.462 -6.616 13.844 Atomic orbital electron populations 1.22986 0.79704 1.03906 1.00667 1.87871 1.21363 1.27774 1.95095 1.22916 0.93799 0.84187 0.95843 0.91321 1.22841 0.98607 0.98622 0.96556 1.22873 0.97345 0.98122 0.98973 1.20964 0.94579 0.87802 0.90407 0.93723 1.42762 1.24987 1.39501 1.31682 1.20420 0.99940 1.14811 1.11142 0.91601 1.27213 1.08078 0.98990 0.95322 1.70994 1.15807 1.45009 1.30663 0.82623 0.71390 0.75157 0.75544 1.21893 1.20412 1.20349 1.22414 0.94822 1.00039 0.98758 0.93686 0.93087 0.88037 0.90204 0.90166 0.93174 0.92184 0.80838 0.94642 0.90466 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.85 113.37 1.23 1.69 15 2 O -0.40 -11.25 10.41 -148.98 -1.55 -12.80 15 3 C 0.09 2.70 3.35 31.67 0.11 2.81 15 4 H 0.07 1.98 7.82 -2.39 -0.02 1.96 15 5 C -0.13 -3.64 6.62 31.88 0.21 -3.42 15 6 C -0.13 -4.80 6.53 31.67 0.21 -4.59 15 7 C 0.17 7.11 3.55 45.71 0.16 7.28 15 8 H 0.04 1.92 8.08 -2.39 -0.02 1.90 15 9 N -0.75 -38.79 5.08 -319.52 -1.62 -40.41 15 10 C -0.33 -19.06 9.96 84.03 0.84 -18.22 15 11 H 0.07 3.69 7.83 -2.91 -0.02 3.67 15 12 C -0.11 -6.21 5.50 84.86 0.47 -5.74 15 13 N -0.98 -62.10 13.70 21.65 0.30 -61.80 15 14 Si 1.13 52.62 29.92 68.60 2.05 54.67 15 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 17 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 18 C -0.12 -4.33 6.33 31.32 0.20 -4.13 15 19 H 0.04 0.83 8.11 -2.38 -0.02 0.81 15 20 H 0.05 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.10 1.57 8.14 -2.38 -0.02 1.55 15 22 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.08 1.94 8.14 -2.38 -0.02 1.92 15 24 H 0.05 1.99 8.05 -2.39 -0.02 1.97 15 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.36 19.38 6.35 -92.71 -0.59 18.80 15 27 H 0.24 15.42 6.77 -92.71 -0.63 14.79 15 28 H 0.08 2.63 8.07 -2.39 -0.02 2.61 15 29 H 0.06 2.19 7.62 -2.38 -0.02 2.17 15 Total: -1.00 -66.56 242.52 3.26 -63.30 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.67 Total: 21.37 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 3.42 Total: -24.34 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -1.33 Total: -102.21 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.55 Total: -12.80 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.05 Total: 54.67 kcal Total: -66.56 3.26 -63.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234851252.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.474 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds