Wall clock time and date at job start Mon Mar 30 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00027 * 2 1 4 4 H 1.09002 * 109.50385 * 330.00033 * 3 2 1 5 5 C 1.53116 * 109.53279 * 90.09772 * 3 2 1 6 6 C 1.53121 * 109.15919 * 177.61431 * 5 3 2 7 7 C 1.53038 * 109.28145 * 302.34666 * 6 5 3 8 8 N 1.46852 * 109.51991 * 59.17795 * 7 6 5 9 9 C 1.46851 * 111.19904 * 298.25890 * 8 7 6 10 10 H 1.08999 * 109.46045 * 301.72942 * 9 8 7 11 11 C 1.50693 * 109.46167 * 181.76091 * 9 8 7 12 12 H 1.08002 * 120.00092 * 239.94497 * 11 9 8 13 13 C 1.37879 * 120.00225 * 59.94514 * 11 9 8 14 14 N 1.31518 * 120.00031 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 119.99963 * 0.02562 * 13 11 9 16 16 H 1.48504 * 109.47145 * 89.99874 * 15 13 11 17 17 H 1.48495 * 109.47206 * 209.99776 * 15 13 11 18 18 H 1.48501 * 109.46942 * 329.99768 * 15 13 11 19 19 H 1.09001 * 109.47160 * 59.99583 * 1 2 3 20 20 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46673 * 299.99883 * 1 2 3 22 22 H 1.08997 * 109.52585 * 297.52226 * 5 3 2 23 23 H 1.09000 * 109.52333 * 57.71118 * 5 3 2 24 24 H 1.09004 * 109.50344 * 182.40461 * 6 5 3 25 25 H 1.08998 * 109.53750 * 62.30672 * 6 5 3 26 26 H 1.08996 * 109.46179 * 299.16359 * 7 6 5 27 27 H 1.09000 * 109.46642 * 179.19034 * 7 6 5 28 28 H 1.00895 * 110.99883 * 62.35931 * 8 7 6 29 29 H 0.97002 * 119.99857 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3454 1.9999 -0.5137 5 6 2.2207 1.7722 1.4430 6 6 2.8980 3.1454 1.4334 7 6 4.2223 3.0504 0.6723 8 7 3.9671 2.6008 -0.7023 9 6 3.3602 1.2637 -0.7196 10 1 4.0199 0.5589 -0.2135 11 6 3.1554 0.8238 -2.1462 12 1 2.1620 0.5966 -2.5040 13 6 4.2362 0.7112 -2.9949 14 7 4.0575 0.3267 -4.2399 15 14 5.9545 1.1033 -2.3760 16 1 6.5750 -0.1281 -1.8245 17 1 6.7809 1.6134 -3.4994 18 1 5.8737 2.1361 -1.3121 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.2568 1.8450 1.9466 23 1 2.8541 1.0573 1.9683 24 1 3.0893 3.4641 2.4581 25 1 2.2475 3.8693 0.9426 26 1 4.8779 2.3372 1.1718 27 1 4.7003 4.0298 0.6512 28 1 3.3928 3.2651 -1.1992 29 1 4.8178 0.2478 -4.8370 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238347874.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:50 Heat of formation + Delta-G solvation = -44.036364 kcal Electronic energy + Delta-G solvation = -12046.267019 eV Core-core repulsion = 9969.401110 eV Total energy + Delta-G solvation = -2076.865910 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.67623 -35.97187 -32.67254 -30.77446 -29.62235 -26.03293 -25.04898 -22.36191 -21.05703 -19.72109 -16.69536 -15.92744 -15.17454 -14.58257 -14.38868 -14.06556 -13.44538 -13.08914 -12.61731 -12.15483 -12.00011 -11.60041 -11.08862 -10.83310 -10.64229 -10.48575 -10.15906 -9.85655 -9.57828 -9.22310 -8.75199 -8.40104 -7.01553 -5.90926 -3.97707 3.58008 3.66476 3.97228 4.45087 4.78559 5.16386 5.28429 5.39121 5.48200 5.67085 5.68513 5.80523 5.92308 6.00029 6.03445 6.10551 6.17705 6.23065 6.46363 6.60124 6.66444 7.05644 7.63913 7.94463 8.25667 8.28359 8.72652 9.10830 9.74128 11.19398 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.018785 C = 0.013430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.471263 B = 1490.208760 C = 2084.363680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.076 3.924 4 H 0.049 0.951 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.048 3.952 8 N -0.669 5.669 9 C 0.188 3.812 10 H 0.043 0.957 11 C -0.511 4.511 12 H 0.070 0.930 13 C 0.082 3.918 14 N -0.903 5.903 15 Si 0.862 3.138 16 H -0.297 1.297 17 H -0.305 1.305 18 H -0.192 1.192 19 H 0.037 0.963 20 H 0.076 0.924 21 H 0.026 0.974 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.332 0.668 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 4.822 10.408 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C 0.016 3.984 4 H 0.067 0.933 5 C -0.182 4.182 6 C -0.189 4.189 7 C -0.082 4.082 8 N -0.300 5.300 9 C 0.080 3.920 10 H 0.061 0.939 11 C -0.549 4.549 12 H 0.088 0.912 13 C -0.122 4.122 14 N -0.541 5.541 15 Si 0.689 3.311 16 H -0.224 1.224 17 H -0.232 1.232 18 H -0.114 1.114 19 H 0.056 0.944 20 H 0.095 0.905 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.333 4.387 10.160 11.310 hybrid contribution -0.379 0.470 0.462 0.760 sum -2.711 4.857 10.621 11.990 Atomic orbital electron populations 1.22650 0.83179 1.01639 0.98824 1.87986 1.17737 1.28008 1.94697 1.22933 0.98091 0.84030 0.93327 0.93289 1.22156 0.99962 0.97100 0.98977 1.22264 0.99189 0.96771 1.00713 1.22042 0.95066 1.00036 0.91103 1.61905 1.51430 1.05410 1.11229 1.19585 0.88028 0.87265 0.97084 0.93884 1.20772 0.95701 1.45598 0.92842 0.91220 1.25000 1.00088 0.92815 0.94274 1.69967 1.31524 1.46924 1.05647 0.87251 0.82414 0.80585 0.80810 1.22436 1.23210 1.11363 0.94441 0.90540 0.95553 0.93235 0.91624 0.92447 0.92483 0.91781 0.91959 0.84936 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.82 101.05 1.09 1.67 15 2 O -0.37 -7.92 9.98 -35.23 -0.35 -8.28 15 3 C 0.08 1.56 2.13 -26.65 -0.06 1.51 15 4 H 0.05 1.01 7.79 -51.93 -0.40 0.60 15 5 C -0.14 -2.43 5.62 -26.61 -0.15 -2.58 15 6 C -0.15 -2.25 6.08 -26.65 -0.16 -2.41 15 7 C 0.05 0.81 6.47 -3.83 -0.02 0.78 15 8 N -0.67 -13.96 3.14 -107.99 -0.34 -14.30 15 9 C 0.19 4.44 1.53 -68.88 -0.11 4.33 15 10 H 0.04 1.09 7.57 -51.93 -0.39 0.70 15 11 C -0.51 -14.57 8.97 -34.44 -0.31 -14.88 15 12 H 0.07 2.19 7.96 -52.49 -0.42 1.77 15 13 C 0.08 2.41 5.47 -17.82 -0.10 2.31 15 14 N -0.90 -28.43 13.96 55.43 0.77 -27.65 15 15 Si 0.86 21.99 26.94 -169.99 -4.58 17.41 15 16 H -0.30 -7.77 7.11 56.52 0.40 -7.37 15 17 H -0.30 -7.94 7.11 56.52 0.40 -7.54 15 18 H -0.19 -4.49 5.10 56.52 0.29 -4.21 15 19 H 0.04 0.63 8.09 -51.93 -0.42 0.21 15 20 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.03 0.38 7.95 -51.93 -0.41 -0.03 15 22 H 0.05 0.76 7.95 -51.93 -0.41 0.34 15 23 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.33 6.74 8.79 -39.29 -0.35 6.39 15 29 H 0.26 7.78 8.31 -40.82 -0.34 7.44 15 LS Contribution 233.65 15.07 3.52 3.52 Total: -1.00 -31.54 233.65 -5.38 -36.92 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.59 Total: 1.65 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.19 Total: -9.27 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.43 Total: -41.95 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.35 Total: -8.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.58 Total: 17.41 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.54 -5.38 -36.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238347874.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.115 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds