Wall clock time and date at job start Mon Mar 30 2020 02:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00027 * 2 1 4 4 H 1.09002 * 109.50385 * 330.00033 * 3 2 1 5 5 C 1.53116 * 109.53279 * 90.09772 * 3 2 1 6 6 C 1.53121 * 109.15919 * 177.61431 * 5 3 2 7 7 C 1.53038 * 109.28145 * 302.34666 * 6 5 3 8 8 N 1.46852 * 109.51991 * 59.17795 * 7 6 5 9 9 C 1.46851 * 111.19904 * 298.25890 * 8 7 6 10 10 H 1.08999 * 109.46045 * 301.72942 * 9 8 7 11 11 C 1.50693 * 109.46167 * 181.76091 * 9 8 7 12 12 H 1.08002 * 120.00092 * 239.94497 * 11 9 8 13 13 C 1.37879 * 120.00225 * 59.94514 * 11 9 8 14 14 N 1.31518 * 120.00031 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 119.99963 * 0.02562 * 13 11 9 16 16 H 1.48504 * 109.47145 * 89.99874 * 15 13 11 17 17 H 1.48495 * 109.47206 * 209.99776 * 15 13 11 18 18 H 1.48501 * 109.46942 * 329.99768 * 15 13 11 19 19 H 1.09001 * 109.47160 * 59.99583 * 1 2 3 20 20 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46673 * 299.99883 * 1 2 3 22 22 H 1.08997 * 109.52585 * 297.52226 * 5 3 2 23 23 H 1.09000 * 109.52333 * 57.71118 * 5 3 2 24 24 H 1.09004 * 109.50344 * 182.40461 * 6 5 3 25 25 H 1.08998 * 109.53750 * 62.30672 * 6 5 3 26 26 H 1.08996 * 109.46179 * 299.16359 * 7 6 5 27 27 H 1.09000 * 109.46642 * 179.19034 * 7 6 5 28 28 H 1.00895 * 110.99883 * 62.35931 * 8 7 6 29 29 H 0.97002 * 119.99857 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3454 1.9999 -0.5137 5 6 2.2207 1.7722 1.4430 6 6 2.8980 3.1454 1.4334 7 6 4.2223 3.0504 0.6723 8 7 3.9671 2.6008 -0.7023 9 6 3.3602 1.2637 -0.7196 10 1 4.0199 0.5589 -0.2135 11 6 3.1554 0.8238 -2.1462 12 1 2.1620 0.5966 -2.5040 13 6 4.2362 0.7112 -2.9949 14 7 4.0575 0.3267 -4.2399 15 14 5.9545 1.1033 -2.3760 16 1 6.5750 -0.1281 -1.8245 17 1 6.7809 1.6134 -3.4994 18 1 5.8737 2.1361 -1.3121 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.2568 1.8450 1.9466 23 1 2.8541 1.0573 1.9683 24 1 3.0893 3.4641 2.4581 25 1 2.2475 3.8693 0.9426 26 1 4.8779 2.3372 1.1718 27 1 4.7003 4.0298 0.6512 28 1 3.3928 3.2651 -1.1992 29 1 4.8178 0.2478 -4.8370 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238347874.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:49 Heat of formation + Delta-G solvation = -67.477047 kcal Electronic energy + Delta-G solvation = -12047.283484 eV Core-core repulsion = 9969.401110 eV Total energy + Delta-G solvation = -2077.882374 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.23448 -37.50906 -34.74795 -32.43772 -31.23023 -27.57519 -26.83659 -23.91541 -22.67219 -21.28584 -18.82445 -17.47595 -16.87576 -16.16640 -16.01697 -15.57998 -15.12358 -14.60507 -14.48402 -13.68099 -13.61178 -13.07488 -12.84884 -12.44510 -12.28204 -12.06907 -11.72691 -11.56685 -11.36085 -11.18648 -10.69091 -10.36076 -8.65402 -8.19554 -6.29837 1.53044 1.58026 1.94632 2.64055 2.94119 3.23369 3.79358 4.00131 4.08248 4.16984 4.32457 4.48142 4.49474 4.57689 4.74717 4.80501 4.81052 5.03303 5.14808 5.18743 5.24074 5.38242 5.65726 6.20617 6.27163 6.62649 6.83326 6.87812 7.45860 8.94464 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.018785 C = 0.013430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.471263 B = 1490.208760 C = 2084.363680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.076 3.924 4 H 0.043 0.957 5 C -0.136 4.136 6 C -0.141 4.141 7 C 0.044 3.956 8 N -0.681 5.681 9 C 0.195 3.805 10 H 0.028 0.972 11 C -0.510 4.510 12 H 0.023 0.977 13 C 0.021 3.979 14 N -0.955 5.955 15 Si 0.927 3.073 16 H -0.306 1.306 17 H -0.312 1.312 18 H -0.152 1.152 19 H 0.028 0.972 20 H 0.092 0.908 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.336 0.664 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 6.493 13.112 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.016 3.984 4 H 0.061 0.939 5 C -0.174 4.174 6 C -0.180 4.180 7 C -0.085 4.085 8 N -0.312 5.312 9 C 0.086 3.914 10 H 0.045 0.955 11 C -0.548 4.548 12 H 0.042 0.958 13 C -0.177 4.177 14 N -0.596 5.596 15 Si 0.752 3.248 16 H -0.234 1.234 17 H -0.241 1.241 18 H -0.073 1.073 19 H 0.047 0.953 20 H 0.111 0.889 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.969 6.077 12.893 14.389 hybrid contribution -0.630 -0.092 -0.384 0.743 sum -2.599 5.985 12.510 14.109 Atomic orbital electron populations 1.22842 0.80879 1.03137 0.99775 1.87915 1.20396 1.28904 1.95048 1.22849 0.96084 0.83756 0.95712 0.93935 1.22079 1.01373 0.98063 0.95851 1.22190 0.97761 0.95625 1.02469 1.22194 0.96442 1.01259 0.88589 1.61502 1.51122 1.04140 1.14458 1.19283 0.89929 0.88420 0.93770 0.95455 1.21036 0.93501 1.44761 0.95541 0.95850 1.25936 1.04520 0.92970 0.94254 1.70119 1.32600 1.49524 1.07314 0.86340 0.76767 0.80828 0.80833 1.23429 1.24061 1.07262 0.95347 0.88942 0.92585 0.91090 0.91997 0.89119 0.91622 0.91882 0.89128 0.84525 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.82 113.37 1.23 2.21 15 2 O -0.40 -17.33 9.98 -148.98 -1.49 -18.82 15 3 C 0.08 3.02 2.13 30.64 0.07 3.08 15 4 H 0.04 1.72 7.79 -2.39 -0.02 1.70 15 5 C -0.14 -4.11 5.62 30.67 0.17 -3.93 15 6 C -0.14 -3.54 6.08 30.65 0.19 -3.36 15 7 C 0.04 1.30 6.47 86.32 0.56 1.86 15 8 N -0.68 -26.69 3.14 -495.56 -1.56 -28.25 15 9 C 0.19 9.05 1.53 44.19 0.07 9.12 15 10 H 0.03 1.37 7.57 -2.39 -0.02 1.35 15 11 C -0.51 -29.92 8.97 25.60 0.23 -29.69 15 12 H 0.02 1.54 7.96 -2.91 -0.02 1.52 15 13 C 0.02 1.26 5.47 84.65 0.46 1.72 15 14 N -0.96 -62.42 13.96 21.45 0.30 -62.12 15 15 Si 0.93 45.85 26.94 68.60 1.85 47.70 15 16 H -0.31 -15.51 7.11 99.48 0.71 -14.80 15 17 H -0.31 -15.75 7.11 99.48 0.71 -15.04 15 18 H -0.15 -6.55 5.10 99.48 0.51 -6.04 15 19 H 0.03 0.95 8.09 -2.39 -0.02 0.93 15 20 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 21 H 0.06 1.47 7.95 -2.39 -0.02 1.45 15 22 H 0.07 1.86 7.95 -2.39 -0.02 1.84 15 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 27 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 28 H 0.34 12.91 8.79 -89.70 -0.79 12.12 15 29 H 0.26 16.11 8.31 -92.71 -0.77 15.34 15 Total: -1.00 -70.40 233.65 2.20 -68.20 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.13 Total: 12.27 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 2.97 Total: -18.99 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -1.26 Total: -90.37 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.49 Total: -18.82 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.85 Total: 47.70 kcal Total: -70.40 2.20 -68.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238347874.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.719 kcal (2) G-P(sol) polarization free energy of solvation -70.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds