Wall clock time and date at job start Mon Mar 30 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46907 * 110.99769 * 306.04832 * 12 2 1 14 14 C 1.46896 * 111.00152 * 69.99914 * 12 2 1 15 15 C 1.53005 * 109.47355 * 169.99941 * 14 12 2 16 16 H 1.09002 * 115.71199 * 33.05754 * 15 14 12 17 17 C 1.53001 * 117.77226 * 179.97438 * 15 14 12 18 18 O 1.42897 * 117.77382 * 246.01932 * 15 14 12 19 19 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 23 23 H 1.08995 * 109.47407 * 59.99898 * 13 12 2 24 24 H 1.09006 * 109.46770 * 179.97438 * 13 12 2 25 25 H 1.09003 * 109.46848 * 299.99626 * 13 12 2 26 26 H 1.09006 * 109.47466 * 290.00215 * 14 12 2 27 27 H 1.09000 * 109.46995 * 50.00413 * 14 12 2 28 28 H 1.08996 * 117.77016 * 213.68534 * 17 15 14 29 29 H 1.09002 * 117.77328 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0198 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4887 -0.5257 -3.5973 16 1 2.5868 -1.6111 -3.5765 17 6 2.3401 0.1505 -4.9617 18 8 3.5448 0.2281 -4.1960 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7086 1.1614 3.4844 23 1 0.3491 -1.9550 -1.3693 24 1 1.8134 -2.5258 -2.2045 25 1 1.7060 -2.6221 -0.4301 26 1 0.6815 0.1052 -2.6088 27 1 2.1026 1.1188 -2.2604 28 1 2.3409 -0.4858 -5.8466 29 1 1.7177 1.0434 -5.0210 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251481416.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:37 Heat of formation + Delta-G solvation = 0.535961 kcal Electronic energy + Delta-G solvation = -11583.946697 eV Core-core repulsion = 9509.013588 eV Total energy + Delta-G solvation = -2074.933109 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.01771 -36.99466 -32.78040 -29.48521 -27.62381 -25.76735 -25.22776 -23.89727 -21.01431 -19.22991 -16.47870 -16.18515 -15.36611 -14.83394 -14.48002 -14.20796 -13.31070 -13.09413 -12.66842 -11.85712 -11.42317 -11.09395 -10.96335 -10.80084 -10.78061 -10.62022 -10.24138 -10.07948 -9.96563 -9.65795 -8.88073 -8.38505 -7.18042 -6.00610 -4.04124 3.31014 3.38837 3.43695 3.69149 4.42079 4.45064 4.90743 5.10354 5.29966 5.34012 5.47434 5.74309 5.79720 6.06495 6.12468 6.33840 6.43842 6.63818 6.78806 6.86787 7.09159 7.43794 7.69237 7.83902 8.11666 8.35751 8.57331 9.01945 9.60926 11.06715 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.069717 B = 0.009635 C = 0.009360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.528590 B = 2905.313426 C = 2990.750626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.534 5.534 13 C 0.030 3.970 14 C 0.064 3.936 15 C 0.011 3.989 16 H 0.123 0.877 17 C -0.052 4.052 18 O -0.358 6.358 19 H 0.033 0.967 20 H 0.089 0.911 21 H 0.006 0.994 22 H 0.259 0.741 23 H 0.021 0.979 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -2.884 -9.531 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.257 5.257 13 C -0.118 4.118 14 C -0.065 4.065 15 C -0.046 4.046 16 H 0.141 0.859 17 C -0.129 4.129 18 O -0.278 6.278 19 H 0.052 0.948 20 H 0.107 0.893 21 H 0.025 0.975 22 H 0.069 0.931 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.758 -2.693 -9.300 9.711 hybrid contribution -0.508 -0.231 0.763 0.945 sum -1.266 -2.924 -8.537 9.112 Atomic orbital electron populations 1.22412 1.00713 0.99495 1.00543 1.19349 0.89839 0.94556 0.85903 0.94314 1.21141 1.30403 1.12488 0.89563 0.91857 1.24936 0.95255 0.95154 0.99040 1.69894 1.37217 1.23104 1.23308 0.86448 0.78508 0.79670 0.82826 1.19721 1.21059 1.21195 1.62328 1.58973 1.02481 1.01947 1.22320 0.96607 0.91968 1.00947 1.21931 0.96651 0.98204 0.89732 1.23972 0.92210 0.96563 0.91866 0.85938 1.24268 0.92001 1.03122 0.93492 1.91679 1.22386 1.73272 1.40431 0.94820 0.89258 0.97473 0.93062 0.96026 0.93908 0.90760 0.93659 0.90465 0.87743 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.22 37.16 0.31 -3.81 15 2 C 0.21 5.30 2.31 -68.86 -0.16 5.15 15 3 H 0.04 1.09 7.93 -51.93 -0.41 0.67 15 4 C -0.50 -13.71 7.97 -34.44 -0.27 -13.98 15 5 H 0.06 1.76 7.10 -52.49 -0.37 1.38 15 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 15 7 N -0.90 -25.57 11.32 55.43 0.63 -24.94 15 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 12 N -0.53 -11.61 4.70 -236.27 -1.11 -12.72 15 13 C 0.03 0.57 8.65 60.07 0.52 1.09 15 14 C 0.06 1.17 4.94 -3.82 -0.02 1.15 15 15 C 0.01 0.18 6.55 -26.73 -0.18 0.00 15 16 H 0.12 1.80 6.35 -51.93 -0.33 1.47 15 17 C -0.05 -0.66 11.42 37.16 0.42 -0.24 15 18 O -0.36 -6.40 14.48 -35.23 -0.51 -6.91 15 19 H 0.03 0.77 6.33 -51.93 -0.33 0.44 15 20 H 0.09 2.37 6.07 -51.93 -0.32 2.05 15 21 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 15 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.02 0.40 6.21 -51.93 -0.32 0.08 15 24 H 0.04 0.68 6.21 -51.93 -0.32 0.36 15 25 H 0.07 1.52 6.86 -51.93 -0.36 1.16 15 26 H 0.05 0.78 7.06 -51.93 -0.37 0.41 15 27 H 0.08 1.51 7.93 -51.93 -0.41 1.09 15 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 29 H 0.11 1.17 8.14 -51.93 -0.42 0.74 15 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -29.77 236.26 -5.80 -35.57 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.88 Total: -1.82 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 0.53 Total: -9.16 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.48 Total: -37.66 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.51 Total: -6.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.77 -5.80 -35.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251481416.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.107 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds