Wall clock time and date at job start Mon Mar 30 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46907 * 110.99769 * 306.04832 * 12 2 1 14 14 C 1.46896 * 111.00152 * 69.99914 * 12 2 1 15 15 C 1.53005 * 109.47355 * 169.99941 * 14 12 2 16 16 H 1.09002 * 115.71199 * 33.05754 * 15 14 12 17 17 C 1.53001 * 117.77226 * 179.97438 * 15 14 12 18 18 O 1.42897 * 117.77382 * 246.01932 * 15 14 12 19 19 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 23 23 H 1.08995 * 109.47407 * 59.99898 * 13 12 2 24 24 H 1.09006 * 109.46770 * 179.97438 * 13 12 2 25 25 H 1.09003 * 109.46848 * 299.99626 * 13 12 2 26 26 H 1.09006 * 109.47466 * 290.00215 * 14 12 2 27 27 H 1.09000 * 109.46995 * 50.00413 * 14 12 2 28 28 H 1.08996 * 117.77016 * 213.68534 * 17 15 14 29 29 H 1.09002 * 117.77328 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0198 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4887 -0.5257 -3.5973 16 1 2.5868 -1.6111 -3.5765 17 6 2.3401 0.1505 -4.9617 18 8 3.5448 0.2281 -4.1960 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7086 1.1614 3.4844 23 1 0.3491 -1.9550 -1.3693 24 1 1.8134 -2.5258 -2.2045 25 1 1.7060 -2.6221 -0.4301 26 1 0.6815 0.1052 -2.6088 27 1 2.1026 1.1188 -2.2604 28 1 2.3409 -0.4858 -5.8466 29 1 1.7177 1.0434 -5.0210 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251481416.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:36 Heat of formation + Delta-G solvation = -21.689264 kcal Electronic energy + Delta-G solvation = -11584.910455 eV Core-core repulsion = 9509.013588 eV Total energy + Delta-G solvation = -2075.896867 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.24308 -38.71742 -34.79277 -31.29270 -29.16742 -27.29734 -27.09541 -25.35534 -22.45839 -20.97752 -18.27849 -17.68743 -16.96499 -16.33738 -16.05435 -15.77373 -14.93454 -14.72916 -14.39628 -13.64922 -13.02947 -12.83506 -12.67107 -12.62598 -12.48013 -12.21026 -12.05014 -11.87652 -11.28638 -11.19029 -10.84260 -10.50114 -8.85778 -8.11180 -6.22170 1.41654 1.43686 1.55649 2.41382 2.55964 3.17973 3.26786 3.52503 3.92936 4.08739 4.23597 4.58112 4.62664 4.64955 4.76982 4.79886 4.85763 4.90287 5.07777 5.13596 5.25060 5.52460 5.70717 5.79543 6.20731 6.47752 6.71107 6.91089 7.47236 8.95203 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.069717 B = 0.009635 C = 0.009360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.528590 B = 2905.313426 C = 2990.750626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.552 5.552 13 C 0.034 3.966 14 C 0.067 3.933 15 C -0.002 4.002 16 H 0.137 0.863 17 C -0.023 4.023 18 O -0.402 6.402 19 H 0.039 0.961 20 H 0.060 0.940 21 H 0.028 0.972 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.141 0.859 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -3.930 -10.750 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.276 5.276 13 C -0.114 4.114 14 C -0.062 4.062 15 C -0.059 4.059 16 H 0.154 0.846 17 C -0.099 4.099 18 O -0.323 6.323 19 H 0.058 0.942 20 H 0.079 0.921 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.035 -3.748 -10.541 11.235 hybrid contribution -0.425 0.133 1.052 1.143 sum -1.461 -3.614 -9.489 10.258 Atomic orbital electron populations 1.22190 0.99683 0.99667 1.00147 1.19093 0.90513 0.92609 0.87213 0.98236 1.21406 1.30504 1.12448 0.90924 0.92621 1.25708 0.95416 0.95837 1.01888 1.70020 1.38004 1.24204 1.23980 0.85459 0.78093 0.78579 0.79196 1.19255 1.20898 1.20409 1.62182 1.59685 1.03707 1.02029 1.22320 0.96957 0.90391 1.01750 1.21913 0.97975 0.96869 0.89414 1.23859 0.92466 0.96827 0.92710 0.84583 1.24816 0.89028 1.03343 0.92673 1.91656 1.24502 1.73838 1.42340 0.94178 0.92106 0.95311 0.92960 0.95444 0.90324 0.92738 0.92082 0.92687 0.84101 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.52 8.22 71.98 0.59 -6.93 15 2 C 0.21 10.96 2.31 44.17 0.10 11.06 15 3 H 0.00 -0.02 7.93 -2.39 -0.02 -0.04 15 4 C -0.51 -28.75 7.97 25.60 0.20 -28.55 15 5 H 0.06 3.12 7.10 -2.91 -0.02 3.10 15 6 C 0.01 0.54 5.30 84.65 0.45 0.99 15 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 15 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 15 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 12 N -0.55 -23.82 4.70 -901.42 -4.24 -28.06 15 13 C 0.03 1.23 8.65 127.69 1.10 2.33 15 14 C 0.07 2.38 4.94 86.31 0.43 2.81 15 15 C 0.00 -0.05 6.55 30.60 0.20 0.15 15 16 H 0.14 3.59 6.35 -2.39 -0.02 3.57 15 17 C -0.02 -0.51 11.42 71.98 0.82 0.31 15 18 O -0.40 -13.72 14.48 -148.98 -2.16 -15.88 15 19 H 0.04 1.81 6.33 -2.39 -0.02 1.80 15 20 H 0.06 3.26 6.07 -2.39 -0.01 3.25 15 21 H 0.03 1.20 6.91 -2.39 -0.02 1.18 15 22 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 23 H 0.03 0.96 6.21 -2.39 -0.01 0.94 15 24 H 0.08 2.28 6.21 -2.38 -0.01 2.27 15 25 H 0.05 2.19 6.86 -2.39 -0.02 2.17 15 26 H 0.06 1.96 7.06 -2.38 -0.02 1.95 15 27 H 0.05 2.17 7.93 -2.39 -0.02 2.15 15 28 H 0.14 2.05 8.14 -2.39 -0.02 2.03 15 29 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 Total: -1.00 -64.66 236.26 0.90 -63.76 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 1.13 Total: 5.01 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.90 Total: -17.82 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -4.00 Total: -81.28 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -2.16 Total: -15.88 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.66 0.90 -63.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251481416.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.074 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds