Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46851 * 111.00052 * 2 1 4 4 C 1.53032 * 109.52414 * 185.84239 * 3 2 1 5 5 C 1.53121 * 109.27513 * 300.81980 * 4 3 2 6 6 H 1.09004 * 109.52479 * 297.74715 * 5 4 3 7 7 C 1.50704 * 109.52032 * 177.56001 * 5 4 3 8 8 H 1.08005 * 119.99896 * 240.31676 * 7 5 4 9 9 C 1.37874 * 120.00027 * 60.31680 * 7 5 4 10 10 N 1.31511 * 120.00294 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00045 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47084 * 90.00257 * 11 9 7 13 13 H 1.48500 * 109.47452 * 210.00081 * 11 9 7 14 14 H 1.48498 * 109.47374 * 330.00389 * 11 9 7 15 15 C 1.53115 * 109.16202 * 57.65517 * 5 4 3 16 16 H 1.09001 * 109.53549 * 182.37830 * 15 5 4 17 17 O 1.42903 * 109.50474 * 62.28778 * 15 5 4 18 18 C 1.46844 * 111.00076 * 124.21240 * 2 1 3 19 19 H 1.08999 * 109.46892 * 295.79056 * 1 2 3 20 20 H 1.08997 * 109.47102 * 55.78870 * 1 2 3 21 21 H 1.09000 * 109.46962 * 175.79285 * 1 2 3 22 22 H 1.08998 * 109.46409 * 305.85920 * 3 2 1 23 23 H 1.08998 * 109.45947 * 65.83251 * 3 2 1 24 24 H 1.08992 * 109.50675 * 60.75956 * 4 3 2 25 25 H 1.09003 * 109.50383 * 180.88271 * 4 3 2 26 26 H 0.96996 * 120.00635 * 179.97438 * 10 9 7 27 27 H 0.96700 * 114.00311 * 180.19865 * 17 15 5 28 28 H 1.08999 * 109.46322 * 54.13992 * 18 2 1 29 29 H 1.09001 * 109.45131 * 294.16927 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 1 3.8887 1.0355 1.9560 7 6 5.6133 0.4464 0.8430 8 1 6.0884 -0.5189 0.7481 9 6 6.3741 1.5956 0.8074 10 7 5.7957 2.7710 0.9234 11 14 8.2266 1.4833 0.5958 12 1 8.5624 1.5132 -0.8505 13 1 8.8735 2.6328 1.2780 14 1 8.7169 0.2145 1.1915 15 6 3.5181 -0.8714 1.0208 16 1 3.9099 -1.4308 1.8703 17 8 3.8632 -1.5429 -0.1925 18 6 1.9953 -0.7708 1.1337 19 1 -0.3633 0.4471 0.9253 20 1 -0.3633 0.5778 -0.8498 21 1 -0.3633 -1.0249 -0.0754 22 1 1.5635 1.9258 -0.8329 23 1 1.7326 1.8608 0.9376 24 1 3.7814 0.8568 -1.0906 25 1 3.9099 2.3513 -0.1310 26 1 6.3309 3.5796 0.8988 27 1 3.5125 -2.4416 -0.2582 28 1 1.5634 -1.7715 1.1242 29 1 1.7325 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258517078.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -50.334069 kcal Electronic energy + Delta-G solvation = -12014.674657 eV Core-core repulsion = 9937.535659 eV Total energy + Delta-G solvation = -2077.138999 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.47065 -35.02972 -33.42299 -30.77278 -29.03850 -26.85028 -24.05981 -22.00487 -21.32219 -18.61309 -16.36220 -16.01820 -14.90602 -14.47380 -14.19019 -14.05020 -13.17662 -12.63883 -12.24764 -11.90048 -11.66142 -11.48616 -11.00295 -10.89189 -10.59675 -10.43175 -9.96070 -9.74564 -9.04032 -8.88733 -8.56908 -8.24663 -7.67806 -5.90097 -3.92698 3.38150 3.43946 3.47943 4.50552 4.54233 5.34306 5.47281 5.48303 5.62797 5.75362 5.88564 6.08211 6.11115 6.17393 6.25595 6.44092 6.65567 6.84491 7.20315 7.44613 7.54059 7.70452 7.91986 8.07611 8.18662 8.50662 8.76114 9.09166 9.69851 11.16781 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.065935 B = 0.012807 C = 0.011452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.560011 B = 2185.761721 C = 2444.491042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.532 5.532 3 C 0.056 3.944 4 C -0.102 4.102 5 C 0.054 3.946 6 H 0.031 0.969 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.115 3.885 16 H 0.041 0.959 17 O -0.536 6.536 18 C 0.026 3.974 19 H 0.015 0.985 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.258 0.742 27 H 0.348 0.652 28 H 0.059 0.941 29 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -4.707 0.010 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.257 5.257 3 C -0.072 4.072 4 C -0.140 4.140 5 C 0.036 3.964 6 H 0.049 0.951 7 C -0.532 4.532 8 H 0.077 0.923 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.201 1.201 15 C 0.056 3.944 16 H 0.058 0.942 17 O -0.337 6.337 18 C -0.103 4.103 19 H 0.034 0.966 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.191 0.809 28 H 0.078 0.922 29 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.008 -4.152 -0.525 8.163 hybrid contribution 0.260 -0.100 0.806 0.853 sum -6.748 -4.252 0.282 7.981 Atomic orbital electron populations 1.22347 0.89212 1.01086 0.99697 1.61909 1.05574 1.15229 1.42939 1.22318 0.99394 0.87001 0.98458 1.21595 0.88807 1.03560 1.00027 1.18756 0.95203 0.87472 0.94965 0.95098 1.21102 0.91204 0.92667 1.48265 0.92347 1.24965 0.98424 0.95477 0.95513 1.69871 1.35111 0.97262 1.51497 0.86577 0.85797 0.77334 0.78152 1.20768 1.21480 1.20057 1.22069 0.89647 0.96935 0.85788 0.94160 1.86765 1.77223 1.29316 1.40416 1.22886 0.98618 0.97103 0.91667 0.96609 0.91953 0.92279 0.92557 0.96189 0.92855 0.89030 0.93188 0.80925 0.92235 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.59 60.07 0.58 0.95 15 2 N -0.53 -10.06 4.79 -242.97 -1.16 -11.23 15 3 C 0.06 1.15 5.46 -3.83 -0.02 1.13 15 4 C -0.10 -2.53 4.97 -26.65 -0.13 -2.67 15 5 C 0.05 1.40 2.00 -91.65 -0.18 1.22 15 6 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 7 C -0.49 -14.07 8.20 -34.44 -0.28 -14.35 15 8 H 0.06 1.68 7.64 -52.48 -0.40 1.28 15 9 C 0.06 1.59 5.31 -17.82 -0.09 1.50 15 10 N -0.90 -26.12 11.37 55.43 0.63 -25.49 15 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 15 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 C 0.11 2.47 3.22 -26.66 -0.09 2.39 15 16 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 17 O -0.54 -11.55 12.13 -35.23 -0.43 -11.98 15 18 C 0.03 0.47 5.12 -3.84 -0.02 0.45 15 19 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 15 20 H 0.06 0.86 8.09 -51.93 -0.42 0.44 15 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.06 1.08 8.09 -51.93 -0.42 0.66 15 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 24 H 0.05 1.42 7.80 -51.93 -0.40 1.01 15 25 H 0.09 2.50 6.18 -51.93 -0.32 2.18 15 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 27 H 0.35 5.65 9.08 45.56 0.41 6.07 15 28 H 0.06 0.93 8.12 -51.93 -0.42 0.51 15 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 LS Contribution 235.18 15.07 3.54 3.54 Total: -1.00 -30.51 235.18 -6.33 -36.84 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -3.65 Total: 0.69 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.24 Total: -9.37 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.53 Total: -36.71 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.43 Total: -11.98 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.51 -6.33 -36.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258517078.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.496 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds