Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46851 * 111.00052 * 2 1 4 4 C 1.53032 * 109.52414 * 185.84239 * 3 2 1 5 5 C 1.53121 * 109.27513 * 300.81980 * 4 3 2 6 6 H 1.09004 * 109.52479 * 297.74715 * 5 4 3 7 7 C 1.50704 * 109.52032 * 177.56001 * 5 4 3 8 8 H 1.08005 * 119.99896 * 240.31676 * 7 5 4 9 9 C 1.37874 * 120.00027 * 60.31680 * 7 5 4 10 10 N 1.31511 * 120.00294 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00045 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47084 * 90.00257 * 11 9 7 13 13 H 1.48500 * 109.47452 * 210.00081 * 11 9 7 14 14 H 1.48498 * 109.47374 * 330.00389 * 11 9 7 15 15 C 1.53115 * 109.16202 * 57.65517 * 5 4 3 16 16 H 1.09001 * 109.53549 * 182.37830 * 15 5 4 17 17 O 1.42903 * 109.50474 * 62.28778 * 15 5 4 18 18 C 1.46844 * 111.00076 * 124.21240 * 2 1 3 19 19 H 1.08999 * 109.46892 * 295.79056 * 1 2 3 20 20 H 1.08997 * 109.47102 * 55.78870 * 1 2 3 21 21 H 1.09000 * 109.46962 * 175.79285 * 1 2 3 22 22 H 1.08998 * 109.46409 * 305.85920 * 3 2 1 23 23 H 1.08998 * 109.45947 * 65.83251 * 3 2 1 24 24 H 1.08992 * 109.50675 * 60.75956 * 4 3 2 25 25 H 1.09003 * 109.50383 * 180.88271 * 4 3 2 26 26 H 0.96996 * 120.00635 * 179.97438 * 10 9 7 27 27 H 0.96700 * 114.00311 * 180.19865 * 17 15 5 28 28 H 1.08999 * 109.46322 * 54.13992 * 18 2 1 29 29 H 1.09001 * 109.45131 * 294.16927 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 1 3.8887 1.0355 1.9560 7 6 5.6133 0.4464 0.8430 8 1 6.0884 -0.5189 0.7481 9 6 6.3741 1.5956 0.8074 10 7 5.7957 2.7710 0.9234 11 14 8.2266 1.4833 0.5958 12 1 8.5624 1.5132 -0.8505 13 1 8.8735 2.6328 1.2780 14 1 8.7169 0.2145 1.1915 15 6 3.5181 -0.8714 1.0208 16 1 3.9099 -1.4308 1.8703 17 8 3.8632 -1.5429 -0.1925 18 6 1.9953 -0.7708 1.1337 19 1 -0.3633 0.4471 0.9253 20 1 -0.3633 0.5778 -0.8498 21 1 -0.3633 -1.0249 -0.0754 22 1 1.5635 1.9258 -0.8329 23 1 1.7326 1.8608 0.9376 24 1 3.7814 0.8568 -1.0906 25 1 3.9099 2.3513 -0.1310 26 1 6.3309 3.5796 0.8988 27 1 3.5125 -2.4416 -0.2582 28 1 1.5634 -1.7715 1.1242 29 1 1.7325 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258517078.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -74.068003 kcal Electronic energy + Delta-G solvation = -12015.703838 eV Core-core repulsion = 9937.535659 eV Total energy + Delta-G solvation = -2078.168179 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11310 -36.61743 -35.42909 -32.70453 -30.69335 -28.55596 -25.83805 -23.71855 -23.01259 -20.41860 -18.45257 -17.64819 -16.77092 -16.26696 -15.70061 -15.57193 -14.88203 -14.46759 -13.84850 -13.66579 -13.35064 -12.88276 -12.84612 -12.61761 -12.38072 -12.33659 -11.93501 -11.67764 -10.96964 -10.73503 -10.48296 -10.29105 -9.13792 -8.06380 -6.16976 1.40966 1.42660 1.52502 2.45735 3.08200 3.20617 3.89046 4.04865 4.18259 4.38814 4.42616 4.62144 4.67316 4.75243 4.80619 4.90991 5.01220 5.05409 5.22628 5.52230 5.60112 5.92542 6.00861 6.27143 6.32351 6.42153 6.90224 7.30086 7.50062 8.98707 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.065935 B = 0.012807 C = 0.011452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.560011 B = 2185.761721 C = 2444.491042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.065 3.935 4 C -0.091 4.091 5 C 0.046 3.954 6 H 0.004 0.996 7 C -0.516 4.516 8 H 0.048 0.952 9 C 0.007 3.993 10 N -0.921 5.921 11 Si 0.955 3.045 12 H -0.279 1.279 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.118 3.882 16 H 0.045 0.955 17 O -0.558 6.558 18 C 0.033 3.967 19 H 0.023 0.977 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.016 0.984 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.260 0.740 27 H 0.373 0.627 28 H 0.097 0.903 29 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 -5.805 -0.116 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.062 4.062 4 C -0.129 4.129 5 C 0.028 3.972 6 H 0.022 0.978 7 C -0.554 4.554 8 H 0.066 0.934 9 C -0.190 4.190 10 N -0.562 5.562 11 Si 0.781 3.219 12 H -0.205 1.205 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.058 3.942 16 H 0.063 0.937 17 O -0.362 6.362 18 C -0.096 4.096 19 H 0.042 0.958 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.090 0.910 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.219 0.781 28 H 0.115 0.885 29 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.933 -5.276 -0.649 9.549 hybrid contribution 0.525 0.214 0.832 1.007 sum -7.407 -5.063 0.183 8.974 Atomic orbital electron populations 1.22435 0.86205 1.02990 1.00559 1.61852 1.08240 1.13573 1.43294 1.22082 0.96371 0.88881 0.98910 1.21319 0.92091 1.01099 0.98405 1.18714 0.94337 0.90433 0.93746 0.97781 1.21409 0.93107 0.92333 1.48560 0.93368 1.25737 1.02831 0.95203 0.95262 1.70002 1.36562 0.97726 1.51875 0.85604 0.80594 0.77644 0.78068 1.20532 1.20690 1.19396 1.21847 0.91895 0.94430 0.85988 0.93714 1.86686 1.77994 1.31278 1.40292 1.22806 0.96147 0.99060 0.91539 0.95850 0.90938 0.89896 0.91035 0.96535 0.95278 0.92216 0.93128 0.78081 0.88491 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.59 127.69 1.22 1.90 15 2 N -0.54 -19.22 4.79 -922.61 -4.42 -23.65 15 3 C 0.07 2.66 5.46 86.32 0.47 3.13 15 4 C -0.09 -4.61 4.97 30.65 0.15 -4.46 15 5 C 0.05 2.42 2.00 -11.46 -0.02 2.40 15 6 H 0.00 0.24 8.14 -2.38 -0.02 0.22 15 7 C -0.52 -29.96 8.20 25.60 0.21 -29.75 15 8 H 0.05 2.82 7.64 -2.91 -0.02 2.80 15 9 C 0.01 0.42 5.31 84.65 0.45 0.86 15 10 N -0.92 -54.83 11.37 21.45 0.24 -54.59 15 11 Si 0.95 45.58 29.54 68.60 2.03 47.61 15 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 15 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 15 C 0.12 4.96 3.22 30.64 0.10 5.05 15 16 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 17 O -0.56 -23.33 12.13 -148.98 -1.81 -25.14 15 18 C 0.03 1.12 5.12 86.32 0.44 1.56 15 19 H 0.02 0.58 8.14 -2.39 -0.02 0.56 15 20 H 0.07 1.75 8.09 -2.39 -0.02 1.73 15 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.07 2.66 8.09 -2.39 -0.02 2.64 15 23 H 0.02 0.68 8.14 -2.39 -0.02 0.66 15 24 H 0.03 1.57 7.80 -2.39 -0.02 1.55 15 25 H 0.06 3.37 6.18 -2.39 -0.01 3.36 15 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 27 H 0.37 11.21 9.08 -74.06 -0.67 10.53 15 28 H 0.10 2.61 8.12 -2.39 -0.02 2.59 15 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 Total: -1.00 -65.92 235.18 -0.49 -66.41 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.45 Total: 8.66 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 3.03 Total: -19.30 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -4.18 Total: -78.23 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.81 Total: -25.14 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -65.92 -0.49 -66.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258517078.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.658 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds