Wall clock time and date at job start Mon Mar 30 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 110.99897 * 2 1 4 4 C 1.53034 * 109.51345 * 174.16738 * 3 2 1 5 5 C 1.53099 * 109.29509 * 59.18740 * 4 3 2 6 6 H 1.09001 * 109.52470 * 62.23762 * 5 4 3 7 7 O 1.42894 * 109.52943 * 182.43805 * 5 4 3 8 8 C 1.53126 * 109.15071 * 302.33888 * 5 4 3 9 9 H 1.08996 * 109.53423 * 297.69425 * 8 5 4 10 10 C 1.50693 * 109.49982 * 177.59173 * 8 5 4 11 11 H 1.08005 * 120.00469 * 0.19794 * 10 8 5 12 12 C 1.37876 * 119.99927 * 180.19824 * 10 8 5 13 13 N 1.31512 * 119.99911 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00281 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47267 * 59.99591 * 14 12 10 16 16 H 1.48504 * 109.47490 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46887 * 299.99969 * 14 12 10 18 18 C 1.46854 * 110.99958 * 235.79138 * 2 1 3 19 19 H 1.09006 * 109.47046 * 56.04889 * 1 2 3 20 20 H 1.09005 * 109.47129 * 176.03970 * 1 2 3 21 21 H 1.08992 * 109.47354 * 296.04336 * 1 2 3 22 22 H 1.09002 * 109.46481 * 294.17890 * 3 2 1 23 23 H 1.08994 * 109.46283 * 54.15743 * 3 2 1 24 24 H 1.09007 * 109.50453 * 179.12106 * 4 3 2 25 25 H 1.09009 * 109.50412 * 299.23146 * 4 3 2 26 26 H 0.96706 * 113.99740 * 299.67262 * 7 5 4 27 27 H 0.97005 * 119.99827 * 180.02562 * 13 12 10 28 28 H 1.08993 * 109.46229 * 305.85774 * 18 2 1 29 29 H 1.09008 * 109.45822 * 65.82829 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 0.1466 5 6 4.1188 0.5371 -1.0144 6 1 3.8887 1.0355 -1.9561 7 8 5.5359 0.4511 -0.8520 8 6 3.5181 -0.8714 -1.0209 9 1 3.7813 -1.3842 -0.0958 10 6 4.0598 -1.6439 -2.1960 11 1 4.7646 -1.1789 -2.8694 12 6 3.6555 -2.9443 -2.4115 13 7 2.7976 -3.5107 -1.5913 14 14 4.3274 -3.9022 -3.8677 15 1 5.8051 -3.9995 -3.7570 16 1 3.7412 -5.2666 -3.8759 17 1 3.9706 -3.2020 -5.1278 18 6 1.9952 -0.7708 -1.1338 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3634 -1.0253 -0.0710 21 1 -0.3633 0.4512 0.9232 22 1 1.7324 1.8609 -0.9376 23 1 1.5636 1.9256 0.8331 24 1 3.9100 2.3510 0.1309 25 1 3.7813 0.8565 1.0905 26 1 5.9830 1.3084 -0.8390 27 1 2.5135 -4.4258 -1.7428 28 1 1.5634 -1.7715 -1.1243 29 1 1.7325 -0.2707 -2.0661 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258541634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:31 Heat of formation + Delta-G solvation = -77.711664 kcal Electronic energy + Delta-G solvation = -11970.857214 eV Core-core repulsion = 9892.531034 eV Total energy + Delta-G solvation = -2078.326180 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.04825 -37.14134 -35.18928 -32.67521 -31.42570 -27.31038 -26.62363 -23.68143 -22.89112 -20.55005 -18.47627 -18.05771 -16.83892 -16.04475 -15.83401 -15.41087 -15.08739 -14.47298 -13.99193 -13.84049 -13.18547 -12.90631 -12.74403 -12.57366 -12.47604 -12.12384 -12.08210 -11.89851 -11.18828 -10.88025 -10.48007 -10.43424 -9.09960 -8.09554 -6.22639 1.40080 1.42735 1.50447 2.43183 3.08194 3.32184 3.65912 4.02351 4.16787 4.32331 4.44142 4.59281 4.60654 4.75178 4.79196 4.91581 5.00455 5.11955 5.20079 5.27226 5.57550 5.81962 5.92067 6.18910 6.41325 6.48212 6.86181 7.17662 7.44814 8.95265 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.041788 B = 0.015392 C = 0.011885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.885220 B = 1818.703277 C = 2355.425093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.567 5.567 3 C 0.060 3.940 4 C -0.139 4.139 5 C 0.111 3.889 6 H 0.037 0.963 7 O -0.576 6.576 8 C 0.056 3.944 9 H -0.006 1.006 10 C -0.526 4.526 11 H 0.049 0.951 12 C 0.010 3.990 13 N -0.917 5.917 14 Si 0.957 3.043 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.269 1.269 18 C 0.083 3.917 19 H 0.025 0.975 20 H 0.054 0.946 21 H 0.086 0.914 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.379 0.621 27 H 0.262 0.738 28 H 0.077 0.923 29 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 9.466 1.505 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.292 5.292 3 C -0.067 4.067 4 C -0.177 4.177 5 C 0.053 3.947 6 H 0.055 0.945 7 O -0.383 6.383 8 C 0.037 3.963 9 H 0.012 0.988 10 C -0.565 4.565 11 H 0.067 0.933 12 C -0.188 4.188 13 N -0.557 5.557 14 Si 0.782 3.218 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.045 4.045 19 H 0.044 0.956 20 H 0.073 0.927 21 H 0.104 0.896 22 H 0.048 0.952 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.227 0.773 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -2.370 8.432 1.977 8.979 hybrid contribution 0.157 0.084 -1.451 1.462 sum -2.214 8.516 0.526 8.815 Atomic orbital electron populations 1.22318 0.86821 1.01438 1.01144 1.62012 1.08379 1.13966 1.44805 1.22057 0.94846 0.89061 1.00772 1.22275 0.95668 1.00712 0.99023 1.21942 0.80157 0.97146 0.95476 0.94537 1.86663 1.20224 1.34927 1.96439 1.18608 0.91258 0.91007 0.95397 0.98754 1.21377 1.25347 0.98330 1.11419 0.93287 1.25787 0.95412 0.98469 0.99178 1.70007 1.33379 1.13919 1.38384 0.85634 0.78598 0.77714 0.79834 1.20087 1.20544 1.19387 1.21986 0.96949 0.97558 0.88030 0.95639 0.92729 0.89581 0.95158 0.88595 0.88636 0.92219 0.77338 0.92897 0.90454 0.98306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.62 127.69 1.23 2.24 15 2 N -0.57 -23.04 4.91 -922.58 -4.53 -27.57 15 3 C 0.06 1.99 5.46 86.32 0.47 2.46 15 4 C -0.14 -4.73 5.72 30.64 0.18 -4.56 15 5 C 0.11 4.81 2.89 30.67 0.09 4.90 15 6 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 7 O -0.58 -24.33 13.02 -148.98 -1.94 -26.27 15 8 C 0.06 3.03 1.99 -11.49 -0.02 3.01 15 9 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 10 C -0.53 -30.83 8.28 25.60 0.21 -30.62 15 11 H 0.05 2.87 7.74 -2.91 -0.02 2.85 15 12 C 0.01 0.57 5.30 84.65 0.45 1.02 15 13 N -0.92 -54.85 11.33 21.45 0.24 -54.61 15 14 Si 0.96 45.31 29.54 68.60 2.03 47.33 15 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 18 C 0.08 4.11 4.51 86.32 0.39 4.50 15 19 H 0.03 0.77 8.14 -2.38 -0.02 0.75 15 20 H 0.05 1.90 8.02 -2.38 -0.02 1.88 15 21 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 22 H 0.03 0.97 8.14 -2.39 -0.02 0.95 15 23 H 0.10 2.55 8.12 -2.39 -0.02 2.53 15 24 H 0.10 2.44 8.14 -2.38 -0.02 2.42 15 25 H 0.06 2.20 8.14 -2.38 -0.02 2.18 15 26 H 0.38 10.94 9.09 -74.05 -0.67 10.26 15 27 H 0.26 14.84 8.31 -92.70 -0.77 14.07 15 28 H 0.08 4.35 5.99 -2.39 -0.01 4.34 15 29 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 15 Total: -1.00 -67.62 236.31 -0.76 -68.38 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.45 Total: 9.77 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 2.99 Total: -17.04 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -4.29 Total: -82.17 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.94 Total: -26.27 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.62 -0.76 -68.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258541634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.332 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds