Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46843 * 110.99855 * 2 1 4 4 C 1.53044 * 109.52357 * 185.83832 * 3 2 1 5 5 C 1.53118 * 109.27700 * 300.82344 * 4 3 2 6 6 H 1.09004 * 109.57172 * 297.71201 * 5 4 3 7 7 O 1.42900 * 109.52205 * 177.55868 * 5 4 3 8 8 C 1.53119 * 109.16284 * 57.64936 * 5 4 3 9 9 H 1.09005 * 109.49860 * 62.32963 * 8 5 4 10 10 C 1.50706 * 109.50108 * 182.40170 * 8 5 4 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 8 5 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 8 5 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46850 * 111.00173 * 124.20918 * 2 1 3 19 19 H 1.09003 * 109.47401 * 56.04500 * 1 2 3 20 20 H 1.09000 * 109.47414 * 176.04980 * 1 2 3 21 21 H 1.08997 * 109.47475 * 296.04425 * 1 2 3 22 22 H 1.09003 * 109.46209 * 65.82589 * 3 2 1 23 23 H 1.08996 * 109.45769 * 305.84448 * 3 2 1 24 24 H 1.08999 * 109.50607 * 180.87729 * 4 3 2 25 25 H 1.09001 * 109.50313 * 60.76211 * 4 3 2 26 26 H 0.96702 * 114.00106 * 60.31799 * 7 5 4 27 27 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 28 28 H 1.08999 * 109.45824 * 54.13946 * 18 2 1 29 29 H 1.08999 * 109.46398 * 294.18241 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5369 1.0144 6 1 3.8896 1.0351 1.9565 7 8 5.5359 0.4510 0.8520 8 6 3.5180 -0.8715 1.0209 9 1 3.7819 -1.3839 0.0957 10 6 4.0597 -1.6440 2.1960 11 1 4.7619 -1.1779 2.8713 12 6 3.6589 -2.9460 2.4088 13 7 4.1313 -3.6200 3.4345 14 14 2.4450 -3.7526 1.2403 15 1 1.0607 -3.5101 1.7197 16 1 2.6069 -3.1745 -0.1180 17 1 2.7027 -5.2142 1.1901 18 6 1.9952 -0.7708 1.1338 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3634 -1.0252 -0.0708 21 1 -0.3634 0.4512 0.9233 22 1 1.7324 1.8608 0.9376 23 1 1.5634 1.9255 -0.8331 24 1 3.9099 2.3512 -0.1310 25 1 3.7813 0.8568 -1.0906 26 1 5.9830 1.3083 0.8390 27 1 3.8490 -4.5359 3.5845 28 1 1.5633 -1.7715 1.1243 29 1 1.7324 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258541645.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = -44.753385 kcal Electronic energy + Delta-G solvation = -12055.002837 eV Core-core repulsion = 9978.105835 eV Total energy + Delta-G solvation = -2076.897002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.69525 -35.69199 -33.07907 -31.27101 -30.34398 -25.83482 -24.78706 -22.44875 -21.11168 -19.01396 -16.79765 -16.48644 -15.43963 -14.58976 -14.21439 -13.89102 -13.52538 -13.00642 -12.69824 -12.39272 -11.98738 -11.49571 -11.23675 -11.02720 -10.82058 -10.54418 -10.19473 -9.81375 -9.38809 -9.06136 -8.81143 -8.50393 -7.84927 -6.01414 -3.99289 3.28136 3.42345 3.49872 4.39458 4.48020 4.99696 5.27813 5.32765 5.48265 5.56565 5.64768 5.77832 5.95951 6.05087 6.09041 6.10593 6.20245 6.42229 6.59753 6.72432 6.91661 7.33117 7.56414 7.62945 7.83612 8.44886 8.62882 9.06210 9.59888 11.11945 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.019797 C = 0.013832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.192278 B = 1413.983844 C = 2023.821220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.064 3.936 4 C -0.151 4.151 5 C 0.121 3.879 6 H 0.042 0.958 7 O -0.549 6.549 8 C 0.026 3.974 9 H 0.043 0.957 10 C -0.500 4.500 11 H 0.077 0.923 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.878 3.122 15 H -0.281 1.281 16 H -0.257 1.257 17 H -0.295 1.295 18 C 0.055 3.945 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.021 0.979 22 H 0.029 0.971 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.355 0.645 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 9.213 -6.502 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.064 4.064 4 C -0.190 4.190 5 C 0.062 3.938 6 H 0.060 0.940 7 O -0.352 6.352 8 C 0.006 3.994 9 H 0.061 0.939 10 C -0.539 4.539 11 H 0.095 0.905 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.708 3.292 15 H -0.209 1.209 16 H -0.181 1.181 17 H -0.223 1.223 18 C -0.072 4.072 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.199 0.801 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.306 8.157 -6.848 11.899 hybrid contribution -0.971 0.451 0.271 1.104 sum -6.277 8.608 -6.578 12.521 Atomic orbital electron populations 1.22322 0.88525 1.01791 0.99711 1.62058 1.06645 1.13202 1.45612 1.21924 0.95288 0.89632 0.99593 1.22407 0.95114 0.99736 1.01706 1.21830 0.80186 0.97758 0.94038 0.93958 1.86745 1.19680 1.32423 1.96325 1.19164 0.88960 0.91910 0.99338 0.93920 1.20952 1.26141 0.97041 1.09717 0.90452 1.25030 0.96243 0.97091 0.95036 1.69897 1.44466 1.10845 1.28776 0.86982 0.81041 0.78037 0.83179 1.20863 1.18121 1.22282 1.22741 0.98315 0.96592 0.89578 0.91993 0.91815 0.96044 0.95320 0.91475 0.92378 0.90721 0.80085 0.92732 0.91714 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 60.06 0.58 0.97 15 2 N -0.55 -10.46 4.91 -242.97 -1.19 -11.65 15 3 C 0.06 1.03 5.46 -3.83 -0.02 1.01 15 4 C -0.15 -2.53 5.72 -26.65 -0.15 -2.68 15 5 C 0.12 2.51 2.89 -26.61 -0.08 2.44 15 6 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 7 O -0.55 -11.45 13.02 -35.23 -0.46 -11.91 15 8 C 0.03 0.63 1.58 -91.69 -0.14 0.49 15 9 H 0.04 1.14 7.19 -51.93 -0.37 0.77 15 10 C -0.50 -14.62 8.86 -34.44 -0.31 -14.93 15 11 H 0.08 2.47 7.99 -52.49 -0.42 2.05 15 12 C 0.07 2.00 5.45 -17.82 -0.10 1.90 15 13 N -0.90 -28.29 13.96 55.43 0.77 -27.52 15 14 Si 0.88 22.49 24.38 -169.99 -4.14 18.35 15 15 H -0.28 -6.92 6.87 56.52 0.39 -6.53 15 16 H -0.26 -6.47 6.53 56.52 0.37 -6.10 15 17 H -0.30 -7.56 7.11 56.52 0.40 -7.16 15 18 C 0.05 1.23 4.23 -3.84 -0.02 1.21 15 19 H 0.06 0.80 8.10 -51.93 -0.42 0.38 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 21 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 15 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.07 0.92 8.09 -51.93 -0.42 0.50 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.36 5.25 9.09 45.56 0.41 5.66 15 27 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 28 H 0.06 1.55 3.30 -51.93 -0.17 1.37 15 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 LS Contribution 229.61 15.07 3.46 3.46 Total: -1.00 -32.66 229.61 -5.33 -37.99 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -3.53 Total: 0.87 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.24 Total: -9.60 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.42 Total: -39.17 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.46 Total: -11.91 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.66 -5.33 -37.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258541645.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.763 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds