Wall clock time and date at job start Mon Mar 30 2020 02:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48558 * 110.99844 * 2 1 4 4 C 1.54384 * 104.59468 * 159.03949 * 3 2 1 5 5 H 1.08993 * 110.32602 * 95.03743 * 4 3 2 6 6 O 1.42900 * 110.32265 * 217.25050 * 4 3 2 7 7 C 1.54265 * 105.05728 * 336.14681 * 4 3 2 8 8 H 1.08997 * 110.41230 * 118.94440 * 7 4 3 9 9 C 1.52998 * 110.32215 * 241.10554 * 7 4 3 10 10 C 1.50696 * 109.47188 * 182.09388 * 9 7 4 11 11 H 1.07995 * 120.00332 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00210 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.48562 * 110.99852 * 115.41770 * 2 1 3 19 19 H 1.08999 * 109.47457 * 304.58542 * 1 2 3 20 20 H 1.09004 * 109.47027 * 64.58153 * 1 2 3 21 21 H 1.09004 * 109.47213 * 184.58107 * 1 2 3 22 22 H 1.08998 * 110.41297 * 277.81222 * 3 2 1 23 23 H 1.08994 * 110.41734 * 40.14108 * 3 2 1 24 24 H 0.96694 * 113.99822 * 295.63108 * 6 4 3 25 25 H 1.09004 * 109.47223 * 62.08729 * 9 7 4 26 26 H 1.09010 * 109.47071 * 302.09081 * 9 7 4 27 27 H 0.97000 * 119.99462 * 359.97438 * 13 12 10 28 28 H 1.09002 * 110.41108 * 82.18062 * 18 2 1 29 29 H 1.09005 * 110.51156 * 319.79151 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2502 0.5345 5 1 4.1483 1.1748 -0.2933 6 8 3.7715 2.3638 1.3676 7 6 3.4432 -0.0539 1.3586 8 1 4.1485 -0.7701 0.9369 9 6 3.7946 0.2400 2.8183 10 6 3.8395 -1.0512 3.5940 11 1 3.6372 -1.9878 3.0958 12 6 4.1378 -1.0368 4.9401 13 7 4.3837 0.1037 5.5470 14 14 4.1927 -2.6373 5.9017 15 1 2.8463 -2.9277 6.4568 16 1 4.6053 -3.7428 5.0000 17 1 5.1701 -2.5139 7.0129 18 6 2.0014 -0.5953 1.2527 19 1 -0.3634 0.5833 0.8460 20 1 -0.3633 0.4411 -0.9282 21 1 -0.3634 -1.0244 0.0821 22 1 2.0080 1.7916 -1.0120 23 1 1.4086 2.0217 0.6585 24 1 3.7867 3.2116 0.9028 25 1 3.0385 0.8966 3.2490 26 1 4.7687 0.7269 2.8667 27 1 4.3555 0.9347 5.0475 28 1 2.0078 -1.6831 1.1838 29 1 1.4103 -0.2730 2.1100 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739541.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:04 Heat of formation + Delta-G solvation = -56.089166 kcal Electronic energy + Delta-G solvation = -11736.887484 eV Core-core repulsion = 9659.498926 eV Total energy + Delta-G solvation = -2077.388558 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.98103 -35.48784 -33.67291 -31.25967 -28.56616 -26.34217 -24.65407 -22.37536 -20.93668 -19.24902 -17.33939 -16.10036 -15.59339 -14.43970 -14.26593 -13.77679 -13.64293 -13.13224 -12.55657 -12.00689 -11.79202 -11.58119 -11.27985 -11.05750 -10.70848 -10.29165 -10.09550 -10.05226 -9.51042 -9.37941 -8.39335 -8.25446 -8.19526 -6.25410 -3.93710 3.47722 3.51909 3.67476 4.24861 4.61691 4.86918 5.02882 5.13338 5.45849 5.52119 5.60531 5.63435 5.80226 5.86760 5.96465 6.23552 6.25641 6.55320 6.68350 6.82436 7.17937 7.27849 7.65040 7.72226 8.06965 8.36312 8.59748 9.00473 9.79020 11.15447 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049490 B = 0.011740 C = 0.010119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.629789 B = 2384.399370 C = 2766.469717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.002 3.998 4 C 0.097 3.903 5 H 0.057 0.943 6 O -0.547 6.547 7 C -0.073 4.073 8 H 0.073 0.927 9 C 0.033 3.967 10 C -0.602 4.602 11 H 0.047 0.953 12 C 0.013 3.987 13 N -0.916 5.916 14 Si 1.069 2.931 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.285 1.285 18 C 0.050 3.950 19 H 0.027 0.973 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.362 0.638 25 H 0.009 0.991 26 H 0.014 0.986 27 H 0.271 0.729 28 H 0.078 0.922 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 1.833 -10.356 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.127 4.127 4 C 0.037 3.963 5 H 0.075 0.925 6 O -0.349 6.349 7 C -0.092 4.092 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.641 4.641 11 H 0.066 0.934 12 C -0.190 4.190 13 N -0.553 5.553 14 Si 0.898 3.102 15 H -0.216 1.216 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.077 4.077 19 H 0.045 0.955 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.207 0.793 25 H 0.028 0.972 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.636 0.411 -8.867 10.014 hybrid contribution -0.742 1.520 -1.348 2.163 sum -5.378 1.931 -10.215 11.704 Atomic orbital electron populations 1.22471 0.88695 1.01838 1.00368 1.65377 1.07731 1.14445 1.36968 1.23839 0.97178 0.91288 1.00410 1.22654 0.92795 0.88464 0.92341 0.92500 1.86818 1.92672 1.16922 1.38525 1.21946 0.95540 0.92468 0.99238 0.90834 1.18964 0.96400 0.96537 0.88522 1.22159 1.52105 0.93292 0.96510 0.93428 1.25796 0.93955 1.03592 0.95676 1.70714 1.45978 0.98766 1.39795 0.83550 0.76713 0.74327 0.75614 1.21622 1.21530 1.21075 1.23132 0.95603 0.99739 0.89209 0.95465 0.91903 0.91373 0.90850 0.93184 0.79272 0.97231 0.96754 0.91858 0.90382 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.53 60.07 0.57 0.79 15 2 N -0.52 -8.85 5.66 -238.23 -1.35 -10.19 15 3 C 0.00 0.02 6.23 -2.18 -0.01 0.01 15 4 C 0.10 1.75 4.40 -25.34 -0.11 1.64 15 5 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 6 O -0.55 -10.14 11.55 -35.23 -0.41 -10.55 15 7 C -0.07 -1.60 3.04 -89.24 -0.27 -1.87 15 8 H 0.07 1.62 8.14 -51.93 -0.42 1.20 15 9 C 0.03 0.89 2.71 -27.89 -0.08 0.82 15 10 C -0.60 -17.60 8.67 -34.44 -0.30 -17.90 15 11 H 0.05 1.36 7.68 -52.49 -0.40 0.95 15 12 C 0.01 0.40 5.46 -17.82 -0.10 0.30 15 13 N -0.92 -29.15 13.65 55.43 0.76 -28.39 15 14 Si 1.07 26.05 29.90 -169.99 -5.08 20.97 15 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 18 C 0.05 1.01 5.53 -2.18 -0.01 1.00 15 19 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.05 0.81 7.84 -51.93 -0.41 0.41 15 24 H 0.36 4.58 9.12 45.56 0.42 4.99 15 25 H 0.01 0.27 7.75 -51.93 -0.40 -0.13 15 26 H 0.01 0.41 7.68 -51.92 -0.40 0.02 15 27 H 0.27 8.71 7.22 -40.82 -0.29 8.41 15 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 29 H 0.05 1.11 7.63 -51.93 -0.40 0.72 15 LS Contribution 239.39 15.07 3.61 3.61 Total: -1.00 -32.97 239.39 -6.41 -39.38 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.63 Total: 0.38 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.31 Total: -15.21 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.59 Total: -38.58 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.41 Total: -10.55 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.97 -6.41 -39.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739541.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.707 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds