Wall clock time and date at job start Mon Mar 30 2020 02:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48558 * 110.99844 * 2 1 4 4 C 1.54384 * 104.59468 * 159.03949 * 3 2 1 5 5 H 1.08993 * 110.32602 * 95.03743 * 4 3 2 6 6 O 1.42900 * 110.32265 * 217.25050 * 4 3 2 7 7 C 1.54265 * 105.05728 * 336.14681 * 4 3 2 8 8 H 1.08997 * 110.41230 * 118.94440 * 7 4 3 9 9 C 1.52998 * 110.32215 * 241.10554 * 7 4 3 10 10 C 1.50696 * 109.47188 * 182.09388 * 9 7 4 11 11 H 1.07995 * 120.00332 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00210 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.48562 * 110.99852 * 115.41770 * 2 1 3 19 19 H 1.08999 * 109.47457 * 304.58542 * 1 2 3 20 20 H 1.09004 * 109.47027 * 64.58153 * 1 2 3 21 21 H 1.09004 * 109.47213 * 184.58107 * 1 2 3 22 22 H 1.08998 * 110.41297 * 277.81222 * 3 2 1 23 23 H 1.08994 * 110.41734 * 40.14108 * 3 2 1 24 24 H 0.96694 * 113.99822 * 295.63108 * 6 4 3 25 25 H 1.09004 * 109.47223 * 62.08729 * 9 7 4 26 26 H 1.09010 * 109.47071 * 302.09081 * 9 7 4 27 27 H 0.97000 * 119.99462 * 359.97438 * 13 12 10 28 28 H 1.09002 * 110.41108 * 82.18062 * 18 2 1 29 29 H 1.09005 * 110.51156 * 319.79151 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2502 0.5345 5 1 4.1483 1.1748 -0.2933 6 8 3.7715 2.3638 1.3676 7 6 3.4432 -0.0539 1.3586 8 1 4.1485 -0.7701 0.9369 9 6 3.7946 0.2400 2.8183 10 6 3.8395 -1.0512 3.5940 11 1 3.6372 -1.9878 3.0958 12 6 4.1378 -1.0368 4.9401 13 7 4.3837 0.1037 5.5470 14 14 4.1927 -2.6373 5.9017 15 1 2.8463 -2.9277 6.4568 16 1 4.6053 -3.7428 5.0000 17 1 5.1701 -2.5139 7.0129 18 6 2.0014 -0.5953 1.2527 19 1 -0.3634 0.5833 0.8460 20 1 -0.3633 0.4411 -0.9282 21 1 -0.3634 -1.0244 0.0821 22 1 2.0080 1.7916 -1.0120 23 1 1.4086 2.0217 0.6585 24 1 3.7867 3.2116 0.9028 25 1 3.0385 0.8966 3.2490 26 1 4.7687 0.7269 2.8667 27 1 4.3555 0.9347 5.0475 28 1 2.0078 -1.6831 1.1838 29 1 1.4103 -0.2730 2.1100 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739541.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:03 Heat of formation + Delta-G solvation = -82.746318 kcal Electronic energy + Delta-G solvation = -11738.043425 eV Core-core repulsion = 9659.498926 eV Total energy + Delta-G solvation = -2078.544499 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46147 -36.89303 -35.80227 -33.09784 -30.06354 -28.08670 -26.34186 -24.36756 -22.33122 -20.93396 -19.19321 -17.96633 -17.06328 -15.83553 -15.65308 -15.62283 -15.37874 -14.86062 -14.17131 -13.61706 -13.55017 -13.14324 -13.09735 -12.59940 -12.36355 -11.97642 -11.93690 -11.80430 -11.39272 -10.88661 -10.57511 -10.51316 -9.61598 -8.66855 -6.36535 1.51029 1.61269 1.78734 2.57505 2.91950 3.18428 3.52465 3.62824 3.73772 4.03995 4.26093 4.41288 4.48103 4.52999 4.70468 4.85727 4.91776 4.92023 4.95612 5.01667 5.37956 5.53767 5.70809 5.95413 6.04400 6.21684 6.59458 6.97350 7.47055 8.73271 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049490 B = 0.011740 C = 0.010119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.629789 B = 2384.399370 C = 2766.469717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.009 3.991 4 C 0.099 3.901 5 H 0.081 0.919 6 O -0.576 6.576 7 C -0.082 4.082 8 H 0.070 0.930 9 C 0.047 3.953 10 C -0.614 4.614 11 H 0.053 0.947 12 C -0.044 4.044 13 N -0.941 5.941 14 Si 1.121 2.879 15 H -0.272 1.272 16 H -0.266 1.266 17 H -0.283 1.283 18 C 0.059 3.941 19 H 0.020 0.980 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.112 0.888 23 H 0.044 0.956 24 H 0.388 0.612 25 H -0.022 1.022 26 H -0.017 1.017 27 H 0.253 0.747 28 H 0.077 0.923 29 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 1.054 -11.839 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.243 5.243 3 C -0.119 4.119 4 C 0.040 3.960 5 H 0.099 0.901 6 O -0.383 6.383 7 C -0.101 4.101 8 H 0.088 0.912 9 C 0.009 3.991 10 C -0.652 4.652 11 H 0.071 0.929 12 C -0.240 4.240 13 N -0.579 5.579 14 Si 0.941 3.059 15 H -0.198 1.198 16 H -0.191 1.191 17 H -0.209 1.209 18 C -0.069 4.069 19 H 0.039 0.961 20 H 0.111 0.889 21 H 0.094 0.906 22 H 0.130 0.870 23 H 0.062 0.938 24 H 0.237 0.763 25 H -0.003 1.003 26 H 0.001 0.999 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.414 -0.340 -10.393 11.724 hybrid contribution -0.507 1.829 -0.932 2.114 sum -5.921 1.488 -11.325 12.866 Atomic orbital electron populations 1.22592 0.86670 1.02667 1.01632 1.65408 1.09629 1.15020 1.34265 1.23866 0.95173 0.90648 1.02243 1.22642 0.95107 0.86461 0.91801 0.90086 1.86754 1.92885 1.18573 1.40092 1.21888 0.96660 0.95258 0.96278 0.91164 1.18713 0.93619 0.94768 0.91955 1.22579 1.51251 0.94310 0.97089 0.92869 1.27503 0.92844 1.06138 0.97535 1.70870 1.48242 0.98937 1.39814 0.82910 0.77618 0.70637 0.74691 1.19791 1.19097 1.20872 1.22888 0.94214 0.99792 0.89995 0.96092 0.88948 0.90605 0.87018 0.93789 0.76279 1.00326 0.99918 0.93770 0.90418 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.53 127.69 1.22 1.54 15 2 N -0.52 -16.39 5.66 -907.61 -5.14 -21.53 15 3 C 0.01 0.26 6.23 86.45 0.54 0.80 15 4 C 0.10 3.44 4.40 31.49 0.14 3.57 15 5 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 6 O -0.58 -21.20 11.55 -148.98 -1.72 -22.92 15 7 C -0.08 -3.59 3.04 -9.90 -0.03 -3.62 15 8 H 0.07 3.08 8.14 -2.39 -0.02 3.07 15 9 C 0.05 2.62 2.71 29.85 0.08 2.70 15 10 C -0.61 -36.55 8.67 25.60 0.22 -36.33 15 11 H 0.05 3.04 7.68 -2.91 -0.02 3.02 15 12 C -0.04 -2.64 5.46 84.65 0.46 -2.18 15 13 N -0.94 -61.48 13.65 21.45 0.29 -61.19 15 14 Si 1.12 52.03 29.90 68.60 2.05 54.09 15 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 15 18 C 0.06 2.35 5.53 86.45 0.48 2.82 15 19 H 0.02 0.56 7.97 -2.39 -0.02 0.54 15 20 H 0.09 1.84 8.14 -2.38 -0.02 1.82 15 21 H 0.08 1.81 8.14 -2.38 -0.02 1.79 15 22 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.04 1.34 7.84 -2.39 -0.02 1.32 15 24 H 0.39 9.28 9.12 -74.06 -0.68 8.61 15 25 H -0.02 -1.33 7.75 -2.38 -0.02 -1.34 15 26 H -0.02 -1.07 7.68 -2.38 -0.02 -1.09 15 27 H 0.25 17.03 7.22 -92.71 -0.67 16.36 15 28 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 29 H 0.02 1.04 7.63 -2.38 -0.02 1.03 15 Total: -1.00 -72.45 239.39 -0.86 -73.32 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.54 Total: 8.93 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.11 Total: -30.68 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -4.84 Total: -82.72 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.72 Total: -22.92 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.09 kcal Total: -72.45 -0.86 -73.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739541.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.431 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds