Wall clock time and date at job start Mon Mar 30 2020 02:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.90483 * 2 1 4 4 N 1.47901 * 109.91681 * 121.30397 * 2 1 3 5 5 C 1.46899 * 111.00063 * 265.19666 * 4 2 1 6 6 C 1.48540 * 105.81388 * 144.68454 * 4 2 1 7 7 C 1.54933 * 103.22963 * 320.79200 * 6 4 2 8 8 C 1.53987 * 109.91701 * 238.90149 * 2 1 3 9 9 O 1.42904 * 110.30808 * 358.43323 * 8 2 1 10 10 C 1.50695 * 110.31268 * 120.50348 * 8 2 1 11 11 H 1.08001 * 120.00328 * 2.33686 * 10 8 2 12 12 C 1.37879 * 120.00228 * 182.33533 * 10 8 2 13 13 N 1.31518 * 119.99797 * 352.47803 * 12 10 8 14 14 Si 1.86796 * 120.00175 * 172.48433 * 12 10 8 15 15 H 1.48506 * 109.47236 * 179.97438 * 14 12 10 16 16 H 1.48491 * 109.47361 * 59.99823 * 14 12 10 17 17 H 1.48502 * 109.46796 * 299.99543 * 14 12 10 18 18 H 1.09002 * 109.47488 * 181.10303 * 1 2 3 19 19 H 1.09002 * 109.47033 * 301.10620 * 1 2 3 20 20 H 1.09008 * 109.47442 * 61.10233 * 1 2 3 21 21 H 1.08996 * 109.47086 * 60.00709 * 5 4 2 22 22 H 1.09002 * 109.46361 * 179.97438 * 5 4 2 23 23 H 1.08992 * 109.46982 * 300.00057 * 5 4 2 24 24 H 1.08995 * 110.66445 * 79.23166 * 6 4 2 25 25 H 1.09001 * 110.66124 * 202.36079 * 6 4 2 26 26 H 1.09003 * 110.72554 * 279.06395 * 7 6 4 27 27 H 1.08996 * 110.72389 * 155.77546 * 7 6 4 28 28 H 0.96704 * 113.99894 * 187.82081 * 9 8 2 29 29 H 0.96997 * 120.00015 * 354.58867 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0250 0.0000 4 7 2.0338 -0.7225 1.1881 5 6 2.3211 0.2083 2.2877 6 6 3.2681 -1.4197 0.7446 7 6 2.9059 -1.9104 -0.6796 8 6 2.0545 -0.7478 -1.2397 9 8 0.9639 -1.2557 -2.0109 10 6 2.9072 0.1670 -2.0805 11 1 3.0999 1.1780 -1.7531 12 6 3.4414 -0.2865 -3.2679 13 7 3.3326 -1.5556 -3.5957 14 14 4.3197 0.9013 -4.4111 15 1 4.7993 0.1701 -5.6114 16 1 5.4779 1.5040 -3.7038 17 1 3.3806 1.9740 -4.8268 18 1 -0.3634 -1.0275 0.0198 19 1 -0.3633 0.5309 0.8799 20 1 -0.3634 0.4966 -0.8997 21 1 1.4095 0.7390 2.5620 22 1 2.6896 -0.3494 3.1487 23 1 3.0770 0.9256 1.9683 24 1 4.1097 -0.7279 0.7107 25 1 3.4888 -2.2640 1.3978 26 1 2.3213 -2.8293 -0.6340 27 1 3.8052 -2.0534 -1.2787 28 1 1.2320 -1.8359 -2.7366 29 1 2.9469 -2.1871 -2.9685 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:33 Heat of formation + Delta-G solvation = -48.187735 kcal Electronic energy + Delta-G solvation = -12248.808041 eV Core-core repulsion = 10171.762114 eV Total energy + Delta-G solvation = -2077.045927 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.76503 -35.14300 -32.24346 -30.36174 -30.03485 -26.02109 -24.27669 -23.26485 -20.26241 -18.96458 -17.92035 -15.18567 -14.67849 -14.21897 -13.86582 -13.71286 -13.35941 -12.77799 -12.12993 -12.02282 -11.72758 -11.10656 -10.85424 -10.68762 -10.53906 -10.42396 -10.36812 -10.15617 -10.04144 -9.09261 -8.56387 -8.08312 -7.78076 -6.47510 -4.29330 3.36126 3.39007 3.57329 4.40910 4.66649 5.07274 5.54232 5.58911 5.72006 5.91716 5.98836 6.02437 6.15740 6.25224 6.29977 6.46725 6.62884 6.71670 6.82136 7.05411 7.18229 7.27744 7.45015 7.70900 8.05778 8.23351 8.64994 9.12566 9.42698 10.81843 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049038 B = 0.014898 C = 0.014420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.853802 B = 1878.960657 C = 1941.320310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.080 3.920 3 H 0.050 0.950 4 N -0.522 5.522 5 C 0.019 3.981 6 C 0.044 3.956 7 C -0.150 4.150 8 C 0.234 3.766 9 O -0.580 6.580 10 C -0.611 4.611 11 H 0.052 0.948 12 C 0.031 3.969 13 N -0.909 5.909 14 Si 1.066 2.934 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.286 1.286 18 H 0.057 0.943 19 H 0.030 0.970 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.024 0.976 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.366 0.634 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 1.673 6.130 6.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.028 4.028 3 H 0.068 0.932 4 N -0.247 5.247 5 C -0.130 4.130 6 C -0.083 4.083 7 C -0.189 4.189 8 C 0.195 3.805 9 O -0.387 6.387 10 C -0.649 4.649 11 H 0.070 0.930 12 C -0.173 4.173 13 N -0.549 5.549 14 Si 0.894 3.106 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.212 1.212 18 H 0.076 0.924 19 H 0.049 0.951 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.214 0.786 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.469 1.780 5.295 5.606 hybrid contribution 0.334 0.232 0.948 1.032 sum -0.134 2.012 6.243 6.560 Atomic orbital electron populations 1.21357 0.94613 1.01653 0.99251 1.22352 0.95759 0.95623 0.89055 0.93158 1.64731 1.26584 1.26278 1.07109 1.22444 0.99983 0.95461 0.95132 1.23023 0.91250 0.97411 0.96647 1.23340 1.01674 0.99028 0.94880 1.19558 0.83442 0.89675 0.87875 1.86316 1.36074 1.68920 1.47405 1.22473 1.33515 0.99860 1.09037 0.92976 1.25856 0.95291 0.98862 0.97272 1.70920 1.43278 1.02401 1.38262 0.83592 0.76050 0.74818 0.76147 1.20557 1.21452 1.21224 0.92379 0.95090 0.92405 0.92044 0.92126 0.95790 0.94002 0.91654 0.92955 0.90472 0.78591 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.57 37.16 0.32 -2.00 15 2 C 0.08 1.81 2.74 -66.65 -0.18 1.63 15 3 H 0.05 1.18 6.99 -51.92 -0.36 0.82 15 4 N -0.52 -10.62 5.18 -230.79 -1.20 -11.82 15 5 C 0.02 0.32 9.40 60.06 0.56 0.88 15 6 C 0.04 0.91 6.56 -1.90 -0.01 0.90 15 7 C -0.15 -3.53 5.10 -24.87 -0.13 -3.66 15 8 C 0.23 5.94 0.94 -90.42 -0.08 5.85 15 9 O -0.58 -15.07 11.12 -35.23 -0.39 -15.47 15 10 C -0.61 -16.87 8.18 -34.44 -0.28 -17.15 15 11 H 0.05 1.45 7.36 -52.49 -0.39 1.07 15 12 C 0.03 0.86 5.10 -17.82 -0.09 0.77 15 13 N -0.91 -25.66 12.50 55.43 0.69 -24.96 15 14 Si 1.07 24.49 29.91 -169.99 -5.08 19.41 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 17 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 18 H 0.06 1.24 7.84 -51.93 -0.41 0.84 15 19 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.06 1.24 7.91 -51.92 -0.41 0.83 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 15 24 H 0.04 0.87 7.96 -51.93 -0.41 0.46 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.05 1.19 8.09 -51.93 -0.42 0.77 15 27 H 0.08 1.94 6.46 -51.93 -0.34 1.61 15 28 H 0.37 9.48 6.59 45.56 0.30 9.78 15 29 H 0.27 7.44 4.35 -40.82 -0.18 7.26 15 LS Contribution 230.73 15.07 3.48 3.48 Total: -1.00 -28.90 230.73 -5.91 -34.81 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.51 Total: 7.32 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 0.10 Total: -12.77 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.50 Total: -36.78 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.39 Total: -15.47 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.90 -5.91 -34.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.378 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds