Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.90483 * 2 1 4 4 N 1.47901 * 109.91681 * 121.30397 * 2 1 3 5 5 C 1.46899 * 111.00063 * 265.19666 * 4 2 1 6 6 C 1.48540 * 105.81388 * 144.68454 * 4 2 1 7 7 C 1.54933 * 103.22963 * 320.79200 * 6 4 2 8 8 C 1.53987 * 109.91701 * 238.90149 * 2 1 3 9 9 O 1.42904 * 110.30808 * 358.43323 * 8 2 1 10 10 C 1.50695 * 110.31268 * 120.50348 * 8 2 1 11 11 H 1.08001 * 120.00328 * 2.33686 * 10 8 2 12 12 C 1.37879 * 120.00228 * 182.33533 * 10 8 2 13 13 N 1.31518 * 119.99797 * 352.47803 * 12 10 8 14 14 Si 1.86796 * 120.00175 * 172.48433 * 12 10 8 15 15 H 1.48506 * 109.47236 * 179.97438 * 14 12 10 16 16 H 1.48491 * 109.47361 * 59.99823 * 14 12 10 17 17 H 1.48502 * 109.46796 * 299.99543 * 14 12 10 18 18 H 1.09002 * 109.47488 * 181.10303 * 1 2 3 19 19 H 1.09002 * 109.47033 * 301.10620 * 1 2 3 20 20 H 1.09008 * 109.47442 * 61.10233 * 1 2 3 21 21 H 1.08996 * 109.47086 * 60.00709 * 5 4 2 22 22 H 1.09002 * 109.46361 * 179.97438 * 5 4 2 23 23 H 1.08992 * 109.46982 * 300.00057 * 5 4 2 24 24 H 1.08995 * 110.66445 * 79.23166 * 6 4 2 25 25 H 1.09001 * 110.66124 * 202.36079 * 6 4 2 26 26 H 1.09003 * 110.72554 * 279.06395 * 7 6 4 27 27 H 1.08996 * 110.72389 * 155.77546 * 7 6 4 28 28 H 0.96704 * 113.99894 * 187.82081 * 9 8 2 29 29 H 0.96997 * 120.00015 * 354.58867 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0250 0.0000 4 7 2.0338 -0.7225 1.1881 5 6 2.3211 0.2083 2.2877 6 6 3.2681 -1.4197 0.7446 7 6 2.9059 -1.9104 -0.6796 8 6 2.0545 -0.7478 -1.2397 9 8 0.9639 -1.2557 -2.0109 10 6 2.9072 0.1670 -2.0805 11 1 3.0999 1.1780 -1.7531 12 6 3.4414 -0.2865 -3.2679 13 7 3.3326 -1.5556 -3.5957 14 14 4.3197 0.9013 -4.4111 15 1 4.7993 0.1701 -5.6114 16 1 5.4779 1.5040 -3.7038 17 1 3.3806 1.9740 -4.8268 18 1 -0.3634 -1.0275 0.0198 19 1 -0.3633 0.5309 0.8799 20 1 -0.3634 0.4966 -0.8997 21 1 1.4095 0.7390 2.5620 22 1 2.6896 -0.3494 3.1487 23 1 3.0770 0.9256 1.9683 24 1 4.1097 -0.7279 0.7107 25 1 3.4888 -2.2640 1.3978 26 1 2.3213 -2.8293 -0.6340 27 1 3.8052 -2.0534 -1.2787 28 1 1.2320 -1.8359 -2.7366 29 1 2.9469 -2.1871 -2.9685 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -69.506474 kcal Electronic energy + Delta-G solvation = -12249.732490 eV Core-core repulsion = 10171.762114 eV Total energy + Delta-G solvation = -2077.970377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.56017 -37.00852 -34.31934 -32.10802 -31.75021 -27.97029 -25.81878 -25.14350 -22.04718 -20.78366 -19.97138 -17.02202 -16.47020 -15.94013 -15.67447 -15.55312 -15.13859 -14.46275 -14.00230 -13.67022 -13.35708 -12.96685 -12.68818 -12.36354 -12.26583 -12.24759 -12.02077 -11.95819 -11.89851 -11.02130 -10.62731 -10.08353 -9.43249 -8.62752 -6.47067 1.51170 1.56474 1.77546 2.50749 2.97188 3.10486 3.75743 3.86875 4.01650 4.28143 4.44896 4.48460 4.59186 4.61151 4.78144 4.90215 4.91534 4.95612 5.04087 5.22438 5.32394 5.50075 5.67319 6.03014 6.07235 6.18217 6.51748 7.06690 7.31905 8.67072 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049038 B = 0.014898 C = 0.014420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.853802 B = 1878.960657 C = 1941.320310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.080 3.920 3 H 0.038 0.962 4 N -0.523 5.523 5 C 0.017 3.983 6 C 0.050 3.950 7 C -0.146 4.146 8 C 0.216 3.784 9 O -0.585 6.585 10 C -0.630 4.630 11 H 0.041 0.959 12 C -0.010 4.010 13 N -0.925 5.925 14 Si 1.110 2.890 15 H -0.280 1.280 16 H -0.273 1.273 17 H -0.277 1.277 18 H 0.049 0.951 19 H 0.061 0.939 20 H 0.043 0.957 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.020 0.980 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.361 0.639 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 2.189 7.275 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.029 4.029 3 H 0.056 0.944 4 N -0.248 5.248 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.184 4.184 8 C 0.177 3.823 9 O -0.392 6.392 10 C -0.668 4.668 11 H 0.059 0.941 12 C -0.211 4.211 13 N -0.565 5.565 14 Si 0.932 3.068 15 H -0.205 1.205 16 H -0.198 1.198 17 H -0.202 1.202 18 H 0.068 0.932 19 H 0.079 0.921 20 H 0.062 0.938 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.209 0.791 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.334 2.297 6.470 6.874 hybrid contribution 0.273 0.061 0.627 0.686 sum -0.062 2.358 7.097 7.479 Atomic orbital electron populations 1.21255 0.93332 1.01352 1.00007 1.22283 0.96868 0.94716 0.89018 0.94401 1.64769 1.26369 1.26900 1.06739 1.22577 1.00875 0.95257 0.94461 1.23017 0.91195 0.98262 0.95271 1.23178 1.00241 0.98529 0.96494 1.19807 0.83507 0.90395 0.88627 1.86307 1.36604 1.68856 1.47434 1.22744 1.34252 0.99802 1.10012 0.94068 1.27090 0.95562 0.99612 0.98787 1.70989 1.44121 1.02939 1.38487 0.83025 0.75798 0.73356 0.74650 1.20480 1.19841 1.20240 0.93213 0.92054 0.93811 0.90509 0.89436 0.96109 0.94546 0.88720 0.92858 0.92836 0.79079 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.10 8.57 71.98 0.62 -3.48 15 2 C 0.08 3.52 2.74 45.06 0.12 3.65 15 3 H 0.04 1.75 6.99 -2.38 -0.02 1.74 15 4 N -0.52 -20.04 5.18 -884.08 -4.58 -24.63 15 5 C 0.02 0.50 9.40 127.69 1.20 1.70 15 6 C 0.05 1.97 6.56 86.65 0.57 2.54 15 7 C -0.15 -6.81 5.10 31.80 0.16 -6.64 15 8 C 0.22 10.97 0.94 -10.66 -0.01 10.96 15 9 O -0.59 -30.75 11.12 -148.98 -1.66 -32.40 15 10 C -0.63 -35.06 8.18 25.60 0.21 -34.85 15 11 H 0.04 2.32 7.36 -2.91 -0.02 2.30 15 12 C -0.01 -0.58 5.10 84.65 0.43 -0.14 15 13 N -0.93 -52.71 12.50 21.45 0.27 -52.44 15 14 Si 1.11 49.06 29.91 68.60 2.05 51.12 15 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 17 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 18 H 0.05 2.06 7.84 -2.39 -0.02 2.04 15 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.04 1.85 7.91 -2.38 -0.02 1.83 15 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.02 0.64 8.01 -2.39 -0.02 0.62 15 24 H 0.04 1.46 7.96 -2.39 -0.02 1.44 15 25 H 0.09 3.17 8.14 -2.39 -0.02 3.15 15 26 H 0.05 2.43 8.09 -2.39 -0.02 2.41 15 27 H 0.05 2.72 6.46 -2.39 -0.02 2.71 15 28 H 0.36 19.16 6.59 -74.05 -0.49 18.68 15 29 H 0.27 14.93 4.35 -92.71 -0.40 14.53 15 Total: -1.00 -60.52 230.73 0.38 -60.14 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 1.00 Total: 24.48 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.30 Total: -26.27 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -4.32 Total: -77.07 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.66 Total: -32.40 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.12 kcal Total: -60.52 0.38 -60.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.369 kcal (2) G-P(sol) polarization free energy of solvation -60.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds