Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.90829 * 2 1 4 4 N 1.47908 * 109.91253 * 238.89888 * 2 1 3 5 5 C 1.46898 * 110.99908 * 94.60526 * 4 2 1 6 6 C 1.48529 * 105.81635 * 215.11499 * 4 2 1 7 7 C 1.54937 * 103.22900 * 39.21288 * 6 4 2 8 8 C 1.54459 * 110.07808 * 121.15717 * 2 1 3 9 9 O 1.42901 * 110.38305 * 239.48376 * 8 2 1 10 10 C 1.50700 * 110.45417 * 1.80003 * 8 2 1 11 11 H 1.07998 * 120.00324 * 356.97993 * 10 8 2 12 12 C 1.37886 * 119.99961 * 176.97762 * 10 8 2 13 13 N 1.31514 * 119.99879 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99967 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47413 * 59.99686 * 14 12 10 16 16 H 1.48495 * 109.47067 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46957 * 299.99545 * 14 12 10 18 18 H 1.09006 * 109.47204 * 179.64650 * 1 2 3 19 19 H 1.09003 * 109.46733 * 299.64373 * 1 2 3 20 20 H 1.08997 * 109.47562 * 59.64650 * 1 2 3 21 21 H 1.08997 * 109.47223 * 177.26917 * 5 4 2 22 22 H 1.09004 * 109.47217 * 297.27301 * 5 4 2 23 23 H 1.09004 * 109.47571 * 57.26592 * 5 4 2 24 24 H 1.08997 * 110.67035 * 280.77032 * 6 4 2 25 25 H 1.09005 * 110.66284 * 157.64303 * 6 4 2 26 26 H 1.09002 * 110.72668 * 80.94033 * 7 6 4 27 27 H 1.08997 * 110.72428 * 204.05169 * 7 6 4 28 28 H 0.96700 * 113.99812 * 183.06636 * 9 8 2 29 29 H 0.96997 * 119.99796 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 7 2.0338 -0.7183 -1.1908 5 6 2.3166 0.2159 -2.2886 6 6 3.2707 -1.4132 -0.7511 7 6 2.9123 -1.9084 0.6725 8 6 2.0603 -0.7506 1.2415 9 8 2.8700 0.1159 2.0387 10 6 0.9156 -1.2951 2.0564 11 1 -0.1029 -1.0899 1.7616 12 6 1.1685 -2.0555 3.1785 13 7 2.4087 -2.3051 3.5378 14 14 -0.2504 -2.7311 4.1882 15 1 -1.0871 -3.6147 3.3372 16 1 0.2841 -3.5087 5.3348 17 1 -1.0764 -1.6061 4.6959 18 1 -0.3634 -1.0277 -0.0063 19 1 -0.3633 0.5083 0.8932 20 1 -0.3634 0.5193 -0.8867 21 1 2.7310 -0.3324 -3.1345 22 1 1.3935 0.7095 -2.5925 23 1 3.0351 0.9639 -1.9532 24 1 4.1105 -0.7191 -0.7171 25 1 3.4926 -2.2552 -1.4068 26 1 2.3303 -2.8288 0.6257 27 1 3.8133 -2.0532 1.2687 28 1 3.2684 -0.3150 2.8073 29 1 2.5866 -2.8397 4.3274 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147163.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = -43.028682 kcal Electronic energy + Delta-G solvation = -12211.340887 eV Core-core repulsion = 10134.518674 eV Total energy + Delta-G solvation = -2076.822213 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.52085 -34.67700 -32.08836 -30.69697 -29.96771 -25.75936 -24.03517 -23.51531 -20.23358 -18.91117 -16.56049 -15.20081 -14.89044 -14.46785 -13.90655 -13.76850 -12.78838 -12.56864 -12.05115 -11.74682 -11.59383 -11.16941 -10.90544 -10.71170 -10.46487 -10.41973 -10.26730 -9.99839 -9.65631 -8.96210 -8.49508 -8.01410 -7.73611 -6.12870 -4.17881 3.29310 3.33680 3.36837 4.37415 4.74229 5.14519 5.61114 5.68672 5.87761 6.06031 6.12970 6.22421 6.26747 6.36259 6.46867 6.60968 6.76254 6.84313 7.12243 7.26147 7.40550 7.57011 7.73358 7.84243 7.94218 8.25191 8.83169 9.47255 9.55749 10.95189 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055047 B = 0.015136 C = 0.013664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.537042 B = 1849.434460 C = 2048.734500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.076 3.924 3 H 0.040 0.960 4 N -0.518 5.518 5 C 0.019 3.981 6 C 0.029 3.971 7 C -0.117 4.117 8 C 0.247 3.753 9 O -0.595 6.595 10 C -0.533 4.533 11 H 0.077 0.923 12 C 0.066 3.934 13 N -0.901 5.901 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.276 1.276 18 H 0.067 0.933 19 H 0.059 0.941 20 H 0.026 0.974 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.381 0.619 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 1.673 -5.564 5.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 H 0.058 0.942 4 N -0.242 5.242 5 C -0.130 4.130 6 C -0.098 4.098 7 C -0.156 4.156 8 C 0.207 3.793 9 O -0.404 6.404 10 C -0.571 4.571 11 H 0.095 0.905 12 C -0.135 4.135 13 N -0.541 5.541 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 H 0.086 0.914 19 H 0.078 0.922 20 H 0.045 0.955 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.231 0.769 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.562 1.653 -6.083 6.329 hybrid contribution 0.172 -0.269 1.237 1.278 sum -0.390 1.384 -4.846 5.055 Atomic orbital electron populations 1.21659 0.94375 1.02088 0.98859 1.22344 0.95809 0.95390 0.89603 0.94182 1.64693 1.26463 1.26055 1.07008 1.22459 0.99944 0.95281 0.95310 1.23298 0.90729 0.97221 0.98587 1.22967 1.00260 1.00523 0.91839 1.19450 0.88252 0.84872 0.86765 1.86091 1.68665 1.42413 1.43250 1.21989 0.93984 1.31435 1.09740 0.90523 1.25057 0.95838 0.95350 0.97255 1.69704 1.18389 1.39902 1.26135 0.86559 0.82358 0.79011 0.79504 1.20138 1.21334 1.20187 0.91370 0.92215 0.95541 0.92250 0.92060 0.96154 0.95009 0.91773 0.91404 0.91755 0.76857 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 8.03 37.16 0.30 -2.04 15 2 C 0.08 1.73 2.91 -66.39 -0.19 1.54 15 3 H 0.04 0.93 7.52 -51.93 -0.39 0.54 15 4 N -0.52 -10.63 5.18 -230.48 -1.19 -11.83 15 5 C 0.02 0.32 9.41 60.06 0.57 0.89 15 6 C 0.03 0.60 6.56 -1.90 -0.01 0.59 15 7 C -0.12 -2.81 5.31 -24.87 -0.13 -2.94 15 8 C 0.25 6.27 1.00 -90.17 -0.09 6.18 15 9 O -0.60 -15.89 12.94 -35.23 -0.46 -16.34 15 10 C -0.53 -14.32 7.27 -34.44 -0.25 -14.57 15 11 H 0.08 2.01 4.75 -52.49 -0.25 1.76 15 12 C 0.07 1.77 5.26 -17.82 -0.09 1.68 15 13 N -0.90 -24.40 10.88 55.43 0.60 -23.79 15 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 H 0.07 1.48 7.03 -51.93 -0.36 1.12 15 19 H 0.06 1.26 7.25 -51.93 -0.38 0.89 15 20 H 0.03 0.47 8.14 -51.93 -0.42 0.05 15 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.02 0.34 7.99 -51.93 -0.41 -0.08 15 24 H 0.03 0.64 8.00 -51.93 -0.42 0.23 15 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.07 1.72 7.86 -51.93 -0.41 1.31 15 27 H 0.06 1.59 7.97 -51.93 -0.41 1.18 15 28 H 0.38 10.23 7.32 45.56 0.33 10.56 15 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 LS Contribution 232.16 15.07 3.50 3.50 Total: -1.00 -27.65 232.16 -6.00 -33.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.53 Total: 7.60 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.59 Total: -35.62 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.46 Total: -16.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.65 -6.00 -33.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147163.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.375 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds