Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.90829 * 2 1 4 4 N 1.47908 * 109.91253 * 238.89888 * 2 1 3 5 5 C 1.46898 * 110.99908 * 94.60526 * 4 2 1 6 6 C 1.48529 * 105.81635 * 215.11499 * 4 2 1 7 7 C 1.54937 * 103.22900 * 39.21288 * 6 4 2 8 8 C 1.54459 * 110.07808 * 121.15717 * 2 1 3 9 9 O 1.42901 * 110.38305 * 239.48376 * 8 2 1 10 10 C 1.50700 * 110.45417 * 1.80003 * 8 2 1 11 11 H 1.07998 * 120.00324 * 356.97993 * 10 8 2 12 12 C 1.37886 * 119.99961 * 176.97762 * 10 8 2 13 13 N 1.31514 * 119.99879 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99967 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47413 * 59.99686 * 14 12 10 16 16 H 1.48495 * 109.47067 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46957 * 299.99545 * 14 12 10 18 18 H 1.09006 * 109.47204 * 179.64650 * 1 2 3 19 19 H 1.09003 * 109.46733 * 299.64373 * 1 2 3 20 20 H 1.08997 * 109.47562 * 59.64650 * 1 2 3 21 21 H 1.08997 * 109.47223 * 177.26917 * 5 4 2 22 22 H 1.09004 * 109.47217 * 297.27301 * 5 4 2 23 23 H 1.09004 * 109.47571 * 57.26592 * 5 4 2 24 24 H 1.08997 * 110.67035 * 280.77032 * 6 4 2 25 25 H 1.09005 * 110.66284 * 157.64303 * 6 4 2 26 26 H 1.09002 * 110.72668 * 80.94033 * 7 6 4 27 27 H 1.08997 * 110.72428 * 204.05169 * 7 6 4 28 28 H 0.96700 * 113.99812 * 183.06636 * 9 8 2 29 29 H 0.96997 * 119.99796 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 7 2.0338 -0.7183 -1.1908 5 6 2.3166 0.2159 -2.2886 6 6 3.2707 -1.4132 -0.7511 7 6 2.9123 -1.9084 0.6725 8 6 2.0603 -0.7506 1.2415 9 8 2.8700 0.1159 2.0387 10 6 0.9156 -1.2951 2.0564 11 1 -0.1029 -1.0899 1.7616 12 6 1.1685 -2.0555 3.1785 13 7 2.4087 -2.3051 3.5378 14 14 -0.2504 -2.7311 4.1882 15 1 -1.0871 -3.6147 3.3372 16 1 0.2841 -3.5087 5.3348 17 1 -1.0764 -1.6061 4.6959 18 1 -0.3634 -1.0277 -0.0063 19 1 -0.3633 0.5083 0.8932 20 1 -0.3634 0.5193 -0.8867 21 1 2.7310 -0.3324 -3.1345 22 1 1.3935 0.7095 -2.5925 23 1 3.0351 0.9639 -1.9532 24 1 4.1105 -0.7191 -0.7171 25 1 3.4926 -2.2552 -1.4068 26 1 2.3303 -2.8288 0.6257 27 1 3.8133 -2.0532 1.2687 28 1 3.2684 -0.3150 2.8073 29 1 2.5866 -2.8397 4.3274 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147163.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = -63.765647 kcal Electronic energy + Delta-G solvation = -12212.240109 eV Core-core repulsion = 10134.518674 eV Total energy + Delta-G solvation = -2077.721436 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.29661 -36.56079 -34.14673 -32.43740 -31.71759 -27.62595 -25.67921 -25.29012 -22.01896 -20.75939 -18.56112 -17.00993 -16.85921 -16.17993 -15.72550 -15.42863 -14.50331 -14.33903 -13.59752 -13.56122 -13.43147 -13.01405 -12.73081 -12.43402 -12.32489 -12.05039 -11.93754 -11.82379 -11.63119 -10.89021 -10.50604 -10.02801 -9.33925 -8.15304 -6.26785 1.44579 1.44855 1.52280 2.43207 3.06071 3.19725 3.83825 4.15594 4.31675 4.41847 4.49185 4.61561 4.69577 4.80662 4.89869 4.98959 5.01805 5.09098 5.27987 5.49554 5.55123 5.64232 5.83064 6.03144 6.23540 6.30655 6.77923 7.39520 7.47255 8.91191 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055047 B = 0.015136 C = 0.013664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.537042 B = 1849.434460 C = 2048.734500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.077 3.923 3 H 0.032 0.968 4 N -0.523 5.523 5 C 0.018 3.982 6 C 0.038 3.962 7 C -0.111 4.111 8 C 0.227 3.773 9 O -0.604 6.604 10 C -0.553 4.553 11 H 0.079 0.921 12 C 0.022 3.978 13 N -0.919 5.919 14 Si 0.957 3.043 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.274 1.274 18 H 0.055 0.945 19 H 0.050 0.950 20 H 0.056 0.944 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.020 0.980 24 H 0.036 0.964 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.375 0.625 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 1.766 -6.683 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.031 4.031 3 H 0.050 0.950 4 N -0.248 5.248 5 C -0.131 4.131 6 C -0.090 4.090 7 C -0.150 4.150 8 C 0.187 3.813 9 O -0.413 6.413 10 C -0.591 4.591 11 H 0.096 0.904 12 C -0.177 4.177 13 N -0.560 5.560 14 Si 0.783 3.217 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.199 1.199 18 H 0.074 0.926 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.225 0.775 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.191 1.755 -7.221 7.526 hybrid contribution 0.396 -0.279 1.562 1.635 sum -0.795 1.476 -5.659 5.902 Atomic orbital electron populations 1.21543 0.93171 1.01566 0.99874 1.22316 0.96829 0.94646 0.89352 0.94960 1.64716 1.26385 1.26893 1.06825 1.22580 1.00997 0.95000 0.94505 1.23240 0.90968 0.98083 0.96708 1.22760 0.98907 0.99288 0.94066 1.19783 0.88138 0.85736 0.87630 1.86087 1.68911 1.43009 1.43244 1.22308 0.94598 1.31783 1.10412 0.90353 1.25762 0.98025 0.95671 0.98265 1.69802 1.19727 1.40132 1.26338 0.85630 0.79662 0.78355 0.78073 1.19706 1.21074 1.19918 0.92605 0.93151 0.92522 0.89760 0.90539 0.96150 0.94599 0.89337 0.93491 0.93464 0.77513 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.18 8.03 71.98 0.58 -3.60 15 2 C 0.08 3.39 2.91 45.22 0.13 3.52 15 3 H 0.03 1.46 7.52 -2.39 -0.02 1.44 15 4 N -0.52 -20.30 5.18 -883.12 -4.58 -24.88 15 5 C 0.02 0.53 9.41 127.69 1.20 1.73 15 6 C 0.04 1.48 6.56 86.65 0.57 2.05 15 7 C -0.11 -5.36 5.31 31.80 0.17 -5.19 15 8 C 0.23 11.55 1.00 -10.50 -0.01 11.54 15 9 O -0.60 -32.64 12.94 -148.98 -1.93 -34.57 15 10 C -0.55 -29.75 7.27 25.60 0.19 -29.57 15 11 H 0.08 4.09 4.75 -2.91 -0.01 4.08 15 12 C 0.02 1.18 5.26 84.66 0.45 1.62 15 13 N -0.92 -50.29 10.88 21.45 0.23 -50.06 15 14 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 16 H -0.29 -12.54 7.11 99.48 0.71 -11.83 15 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 18 H 0.05 2.36 7.03 -2.38 -0.02 2.34 15 19 H 0.05 2.08 7.25 -2.39 -0.02 2.06 15 20 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.02 0.61 7.99 -2.39 -0.02 0.59 15 24 H 0.04 1.38 8.00 -2.39 -0.02 1.36 15 25 H 0.09 3.05 8.14 -2.38 -0.02 3.04 15 26 H 0.05 2.40 7.86 -2.39 -0.02 2.38 15 27 H 0.05 2.37 7.97 -2.39 -0.02 2.35 15 28 H 0.38 20.66 7.32 -74.06 -0.54 20.12 15 29 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15 Total: -1.00 -57.61 232.16 -0.39 -58.00 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.59 Total: 24.57 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 3.27 Total: -17.89 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -4.35 Total: -74.93 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.93 Total: -34.57 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -57.61 -0.39 -58.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147163.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.767 kcal (2) G-P(sol) polarization free energy of solvation -57.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds