Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.90986 * 2 1 4 4 N 1.47902 * 109.91568 * 121.10256 * 2 1 3 5 5 C 1.46906 * 110.99692 * 265.19604 * 4 2 1 6 6 C 1.48535 * 105.82121 * 144.68775 * 4 2 1 7 7 C 1.54940 * 103.22411 * 320.79092 * 6 4 2 8 8 C 1.53995 * 109.91757 * 238.69261 * 2 1 3 9 9 O 1.42898 * 110.30900 * 120.41033 * 8 2 1 10 10 C 1.50694 * 110.30777 * 358.33778 * 8 2 1 11 11 H 1.08000 * 120.00484 * 4.07489 * 10 8 2 12 12 C 1.37879 * 119.99712 * 184.07246 * 10 8 2 13 13 N 1.31510 * 120.00295 * 4.70858 * 12 10 8 14 14 Si 1.86806 * 119.99922 * 184.70647 * 12 10 8 15 15 H 1.48497 * 109.46697 * 85.14144 * 14 12 10 16 16 H 1.48493 * 109.47121 * 205.14016 * 14 12 10 17 17 H 1.48497 * 109.47273 * 325.14362 * 14 12 10 18 18 H 1.09000 * 109.46916 * 300.35389 * 1 2 3 19 19 H 1.09005 * 109.46683 * 60.35174 * 1 2 3 20 20 H 1.08997 * 109.47027 * 180.35211 * 1 2 3 21 21 H 1.08994 * 109.47089 * 60.00342 * 5 4 2 22 22 H 1.09000 * 109.46724 * 180.02562 * 5 4 2 23 23 H 1.08995 * 109.47296 * 299.99871 * 5 4 2 24 24 H 1.08992 * 110.66959 * 79.22233 * 6 4 2 25 25 H 1.08998 * 110.66576 * 202.35835 * 6 4 2 26 26 H 1.09009 * 110.72472 * 279.05985 * 7 6 4 27 27 H 1.08997 * 110.72726 * 155.77411 * 7 6 4 28 28 H 0.96702 * 114.00357 * 174.50237 * 9 8 2 29 29 H 0.97004 * 120.00360 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 7 2.0338 -0.7183 1.1907 5 6 2.3211 0.2165 2.2869 6 6 3.2682 -1.4171 0.7498 7 6 2.9060 -1.9129 -0.6727 8 6 2.0546 -0.7523 -1.2370 9 8 2.8614 0.1129 -2.0386 10 6 0.9046 -1.2930 -2.0470 11 1 -0.1117 -1.0682 -1.7589 12 6 1.1499 -2.0746 -3.1561 13 7 2.3819 -2.4252 -3.4540 14 14 -0.2678 -2.6356 -4.2354 15 1 -0.5811 -1.5782 -5.2299 16 1 0.1131 -3.8839 -4.9436 17 1 -1.4623 -2.8903 -3.3908 18 1 -0.3633 0.5193 0.8868 19 1 -0.3633 0.5084 -0.8932 20 1 -0.3633 -1.0276 0.0063 21 1 1.4095 0.7481 2.5593 22 1 2.6904 -0.3380 3.1497 23 1 3.0771 0.9326 1.9650 24 1 4.1097 -0.7254 0.7134 25 1 3.4888 -2.2590 1.4060 26 1 2.3214 -2.8317 -0.6238 27 1 3.8053 -2.0580 -1.2713 28 1 3.2878 -0.3277 -2.7863 29 1 2.5544 -2.9755 -4.2340 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = -42.110972 kcal Electronic energy + Delta-G solvation = -12216.746937 eV Core-core repulsion = 10139.964518 eV Total energy + Delta-G solvation = -2076.782419 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.55064 -34.68233 -32.12935 -30.71729 -29.94587 -25.73845 -24.03755 -23.52231 -20.24128 -18.90838 -16.54469 -15.20130 -14.89554 -14.47628 -13.90898 -13.77090 -12.78588 -12.59055 -12.05006 -11.71827 -11.61848 -11.19667 -10.91336 -10.71074 -10.42683 -10.40828 -10.24543 -9.98159 -9.63896 -8.94747 -8.53041 -8.00752 -7.72781 -6.11660 -4.16949 3.28464 3.34892 3.37981 4.38100 4.74491 5.15075 5.61679 5.69237 5.88074 6.06192 6.13447 6.22374 6.26824 6.36525 6.47778 6.60349 6.76765 6.85688 7.12774 7.27066 7.41583 7.60061 7.74264 7.84747 7.93873 8.26464 8.84181 9.44257 9.53235 10.95678 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055421 B = 0.015162 C = 0.013654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.099577 B = 1846.305886 C = 2050.244963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.077 3.923 3 H 0.040 0.960 4 N -0.517 5.517 5 C 0.019 3.981 6 C 0.028 3.972 7 C -0.113 4.113 8 C 0.244 3.756 9 O -0.594 6.594 10 C -0.534 4.534 11 H 0.078 0.922 12 C 0.067 3.933 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.273 1.273 18 H 0.025 0.975 19 H 0.059 0.941 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.020 0.980 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.378 0.622 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 1.909 5.448 5.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 H 0.058 0.942 4 N -0.242 5.242 5 C -0.130 4.130 6 C -0.100 4.100 7 C -0.152 4.152 8 C 0.205 3.795 9 O -0.402 6.402 10 C -0.572 4.572 11 H 0.095 0.905 12 C -0.135 4.135 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 H 0.044 0.956 19 H 0.078 0.922 20 H 0.087 0.913 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.485 1.889 5.967 6.277 hybrid contribution 0.193 -0.212 -1.278 1.310 sum -0.292 1.677 4.688 4.987 Atomic orbital electron populations 1.21673 0.94365 1.02130 0.98797 1.22250 0.95853 0.95364 0.89600 0.94186 1.64699 1.26583 1.25867 1.07061 1.22459 0.99801 0.95362 0.95374 1.23328 0.90700 0.97203 0.98751 1.22943 1.00185 1.00462 0.91597 1.19396 0.88410 0.84987 0.86734 1.86126 1.67687 1.41520 1.44859 1.22025 0.94004 1.30604 1.10551 0.90455 1.25057 0.95845 0.95090 0.97499 1.69808 1.19013 1.37584 1.27439 0.86537 0.82544 0.77907 0.80585 1.20572 1.21339 1.19836 0.95597 0.92226 0.91309 0.92078 0.92233 0.96183 0.95056 0.91776 0.91267 0.91684 0.77330 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.02 37.16 0.30 -2.05 15 2 C 0.08 1.75 2.90 -66.64 -0.19 1.56 15 3 H 0.04 0.93 7.56 -51.93 -0.39 0.53 15 4 N -0.52 -10.65 5.18 -230.78 -1.20 -11.84 15 5 C 0.02 0.32 9.40 60.07 0.56 0.89 15 6 C 0.03 0.57 6.56 -1.90 -0.01 0.56 15 7 C -0.11 -2.72 5.14 -24.87 -0.13 -2.84 15 8 C 0.24 6.20 0.99 -90.41 -0.09 6.11 15 9 O -0.59 -15.70 12.93 -35.23 -0.46 -16.16 15 10 C -0.53 -14.32 7.24 -34.44 -0.25 -14.57 15 11 H 0.08 2.03 4.71 -52.49 -0.25 1.78 15 12 C 0.07 1.78 5.27 -17.82 -0.09 1.69 15 13 N -0.90 -24.31 10.92 55.43 0.61 -23.71 15 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 18 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 19 H 0.06 1.26 7.21 -51.93 -0.37 0.89 15 20 H 0.07 1.51 7.02 -51.93 -0.36 1.14 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 15 24 H 0.03 0.63 7.96 -51.93 -0.41 0.22 15 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 26 H 0.07 1.77 7.86 -51.92 -0.41 1.36 15 27 H 0.06 1.61 7.85 -51.93 -0.41 1.20 15 28 H 0.38 9.97 7.60 45.56 0.35 10.32 15 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 232.06 15.07 3.50 3.50 Total: -1.00 -27.66 232.06 -5.98 -33.64 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.50 Total: 7.33 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 0.10 Total: -8.65 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.59 Total: -35.55 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.46 Total: -16.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.66 -5.98 -33.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.476 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds