Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.90986 * 2 1 4 4 N 1.47902 * 109.91568 * 121.10256 * 2 1 3 5 5 C 1.46906 * 110.99692 * 265.19604 * 4 2 1 6 6 C 1.48535 * 105.82121 * 144.68775 * 4 2 1 7 7 C 1.54940 * 103.22411 * 320.79092 * 6 4 2 8 8 C 1.53995 * 109.91757 * 238.69261 * 2 1 3 9 9 O 1.42898 * 110.30900 * 120.41033 * 8 2 1 10 10 C 1.50694 * 110.30777 * 358.33778 * 8 2 1 11 11 H 1.08000 * 120.00484 * 4.07489 * 10 8 2 12 12 C 1.37879 * 119.99712 * 184.07246 * 10 8 2 13 13 N 1.31510 * 120.00295 * 4.70858 * 12 10 8 14 14 Si 1.86806 * 119.99922 * 184.70647 * 12 10 8 15 15 H 1.48497 * 109.46697 * 85.14144 * 14 12 10 16 16 H 1.48493 * 109.47121 * 205.14016 * 14 12 10 17 17 H 1.48497 * 109.47273 * 325.14362 * 14 12 10 18 18 H 1.09000 * 109.46916 * 300.35389 * 1 2 3 19 19 H 1.09005 * 109.46683 * 60.35174 * 1 2 3 20 20 H 1.08997 * 109.47027 * 180.35211 * 1 2 3 21 21 H 1.08994 * 109.47089 * 60.00342 * 5 4 2 22 22 H 1.09000 * 109.46724 * 180.02562 * 5 4 2 23 23 H 1.08995 * 109.47296 * 299.99871 * 5 4 2 24 24 H 1.08992 * 110.66959 * 79.22233 * 6 4 2 25 25 H 1.08998 * 110.66576 * 202.35835 * 6 4 2 26 26 H 1.09009 * 110.72472 * 279.05985 * 7 6 4 27 27 H 1.08997 * 110.72726 * 155.77411 * 7 6 4 28 28 H 0.96702 * 114.00357 * 174.50237 * 9 8 2 29 29 H 0.97004 * 120.00360 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 7 2.0338 -0.7183 1.1907 5 6 2.3211 0.2165 2.2869 6 6 3.2682 -1.4171 0.7498 7 6 2.9060 -1.9129 -0.6727 8 6 2.0546 -0.7523 -1.2370 9 8 2.8614 0.1129 -2.0386 10 6 0.9046 -1.2930 -2.0470 11 1 -0.1117 -1.0682 -1.7589 12 6 1.1499 -2.0746 -3.1561 13 7 2.3819 -2.4252 -3.4540 14 14 -0.2678 -2.6356 -4.2354 15 1 -0.5811 -1.5782 -5.2299 16 1 0.1131 -3.8839 -4.9436 17 1 -1.4623 -2.8903 -3.3908 18 1 -0.3633 0.5193 0.8868 19 1 -0.3633 0.5084 -0.8932 20 1 -0.3633 -1.0276 0.0063 21 1 1.4095 0.7481 2.5593 22 1 2.6904 -0.3380 3.1497 23 1 3.0771 0.9326 1.9650 24 1 4.1097 -0.7254 0.7134 25 1 3.4888 -2.2590 1.4060 26 1 2.3214 -2.8317 -0.6238 27 1 3.8053 -2.0580 -1.2713 28 1 3.2878 -0.3277 -2.7863 29 1 2.5544 -2.9755 -4.2340 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = -62.894756 kcal Electronic energy + Delta-G solvation = -12217.648189 eV Core-core repulsion = 10139.964518 eV Total energy + Delta-G solvation = -2077.683671 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.32641 -36.55820 -34.18251 -32.46054 -31.69380 -27.60587 -25.68872 -25.29125 -22.02731 -20.75498 -18.54026 -16.99419 -16.87851 -16.19426 -15.73005 -15.42681 -14.50015 -14.36910 -13.58992 -13.52623 -13.45362 -13.04217 -12.75358 -12.42815 -12.28367 -12.02992 -11.93187 -11.80812 -11.61182 -10.87158 -10.54789 -10.01304 -9.33199 -8.14189 -6.25779 1.43116 1.44926 1.53316 2.43441 3.06457 3.20120 3.84347 4.15820 4.31781 4.42925 4.48987 4.61174 4.70408 4.81579 4.89397 4.99494 5.02565 5.09339 5.28560 5.50627 5.55923 5.66999 5.83495 6.03372 6.24579 6.31410 6.78834 7.37093 7.46270 8.91629 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055421 B = 0.015162 C = 0.013654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.099577 B = 1846.305886 C = 2050.244963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.078 3.922 3 H 0.033 0.967 4 N -0.524 5.524 5 C 0.018 3.982 6 C 0.036 3.964 7 C -0.107 4.107 8 C 0.226 3.774 9 O -0.602 6.602 10 C -0.553 4.553 11 H 0.079 0.921 12 C 0.023 3.977 13 N -0.917 5.917 14 Si 0.955 3.045 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.269 1.269 18 H 0.055 0.945 19 H 0.050 0.950 20 H 0.054 0.946 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.020 0.980 24 H 0.036 0.964 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.373 0.627 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 2.099 6.526 6.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.031 4.031 3 H 0.051 0.949 4 N -0.249 5.249 5 C -0.131 4.131 6 C -0.091 4.091 7 C -0.146 4.146 8 C 0.186 3.814 9 O -0.410 6.410 10 C -0.591 4.591 11 H 0.096 0.904 12 C -0.177 4.177 13 N -0.557 5.557 14 Si 0.781 3.219 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.194 1.194 18 H 0.074 0.926 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.106 0.894 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.072 2.087 7.062 7.442 hybrid contribution 0.403 -0.256 -1.590 1.660 sum -0.670 1.831 5.472 5.809 Atomic orbital electron populations 1.21553 0.93222 1.01523 0.99835 1.22222 0.96828 0.94673 0.89356 0.94865 1.64719 1.26522 1.26729 1.06900 1.22578 1.00768 0.95135 0.94595 1.23265 0.90960 0.98051 0.96858 1.22724 0.98839 0.99171 0.93833 1.19709 0.88268 0.85833 0.87577 1.86121 1.67876 1.42055 1.44897 1.22338 0.94613 1.30908 1.11246 0.90358 1.25749 0.98016 0.95286 0.98632 1.69904 1.20325 1.37809 1.27660 0.85615 0.79983 0.77377 0.78900 1.20414 1.21113 1.19359 0.92591 0.93105 0.92680 0.90613 0.89765 0.96098 0.94569 0.89433 0.93555 0.93344 0.77895 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.18 8.02 71.98 0.58 -3.61 15 2 C 0.08 3.42 2.90 45.06 0.13 3.55 15 3 H 0.03 1.50 7.56 -2.39 -0.02 1.48 15 4 N -0.52 -20.35 5.18 -884.06 -4.58 -24.93 15 5 C 0.02 0.53 9.40 127.69 1.20 1.73 15 6 C 0.04 1.43 6.56 86.65 0.57 2.00 15 7 C -0.11 -5.14 5.14 31.80 0.16 -4.98 15 8 C 0.23 11.45 0.99 -10.66 -0.01 11.44 15 9 O -0.60 -32.15 12.93 -148.98 -1.93 -34.08 15 10 C -0.55 -29.73 7.24 25.60 0.19 -29.55 15 11 H 0.08 4.10 4.71 -2.91 -0.01 4.09 15 12 C 0.02 1.22 5.27 84.66 0.45 1.66 15 13 N -0.92 -50.09 10.92 21.45 0.23 -49.86 15 14 Si 0.96 42.85 29.54 68.60 2.03 44.88 15 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 18 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 19 H 0.05 2.10 7.21 -2.38 -0.02 2.08 15 20 H 0.05 2.35 7.02 -2.39 -0.02 2.33 15 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.02 0.62 8.00 -2.39 -0.02 0.60 15 24 H 0.04 1.39 7.96 -2.39 -0.02 1.37 15 25 H 0.09 3.04 8.14 -2.39 -0.02 3.02 15 26 H 0.05 2.39 7.86 -2.38 -0.02 2.37 15 27 H 0.05 2.43 7.85 -2.39 -0.02 2.41 15 28 H 0.37 20.14 7.60 -74.06 -0.56 19.58 15 29 H 0.26 13.83 8.31 -92.71 -0.77 13.06 15 Total: -1.00 -57.53 232.06 -0.42 -57.95 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.57 Total: 23.79 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 3.26 Total: -17.76 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -4.35 Total: -74.79 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.93 Total: -34.08 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -57.53 -0.42 -57.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.940 kcal (2) G-P(sol) polarization free energy of solvation -57.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds