Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 C 1.53005 * 113.73242 * 138.02883 * 4 3 2 6 6 O 1.42902 * 109.46982 * 174.99990 * 5 4 3 7 7 C 1.42902 * 113.99832 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46941 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00213 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99853 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00203 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00267 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47153 * 89.99609 * 12 10 8 14 14 H 1.48496 * 109.47438 * 209.99961 * 12 10 8 15 15 H 1.48502 * 109.46916 * 330.00136 * 12 10 8 16 16 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 17 17 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 18 18 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 20 20 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 21 21 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 22 22 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 23 23 H 1.09004 * 109.46796 * 294.99318 * 5 4 3 24 24 H 1.08992 * 109.47543 * 54.99429 * 5 4 3 25 25 H 1.08995 * 109.46749 * 299.99513 * 7 6 5 26 26 H 1.08998 * 109.46911 * 59.99441 * 7 6 5 27 27 H 0.96998 * 120.00180 * 180.02562 * 11 10 8 28 28 H 1.09005 * 113.65869 * 23.13541 * 16 2 1 29 29 H 1.09002 * 113.92722 * 251.82174 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 6 3.2586 1.8621 -2.1885 6 8 4.3011 1.3648 -3.0298 7 6 4.6027 2.2094 -4.1425 8 6 5.7103 1.5916 -4.9564 9 1 6.1406 0.6482 -4.6545 10 6 6.1743 2.2307 -6.0865 11 7 5.6499 3.3794 -6.4544 12 14 7.5477 1.4654 -7.0951 13 1 6.9641 0.5819 -8.1363 14 1 8.3419 2.5387 -7.7449 15 1 8.4290 0.6669 -6.2057 16 6 2.0019 -0.2232 -1.3646 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 2.4459 1.6803 0.9483 21 1 1.3003 2.1201 -0.3924 22 1 3.9474 0.5117 -0.5975 23 1 2.3424 1.9684 -2.7695 24 1 3.5482 2.8326 -1.7860 25 1 3.7144 2.3225 -4.7639 26 1 4.9200 3.1874 -3.7807 27 1 5.9761 3.8288 -7.2497 28 1 1.3025 0.0447 -2.1566 29 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234980.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = -20.333210 kcal Electronic energy + Delta-G solvation = -11103.152392 eV Core-core repulsion = 9027.314328 eV Total energy + Delta-G solvation = -2075.838064 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.79064 -36.45051 -32.77017 -31.08035 -27.64729 -26.05891 -25.81222 -22.39327 -21.94624 -19.44503 -16.51312 -15.96685 -15.44098 -15.17511 -14.85684 -14.34266 -14.11010 -13.08644 -12.76396 -12.61736 -11.83157 -11.64370 -11.36742 -10.93524 -10.88663 -10.58666 -10.50237 -10.31675 -10.00169 -9.12071 -8.88126 -8.75934 -8.18450 -6.11624 -4.13487 3.30307 3.35192 3.40828 3.99959 4.29959 4.51951 4.76571 5.07614 5.24797 5.26804 5.44956 5.50284 5.51878 5.73300 5.78293 5.79379 5.90446 6.09807 6.15419 6.30397 6.51940 7.05505 7.09053 7.41208 7.79050 8.14284 8.56926 9.00103 9.51539 10.99948 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.100773 B = 0.006860 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.786049 B = 4080.799434 C = 4178.627609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.489 5.489 3 C 0.006 3.994 4 C -0.109 4.109 5 C 0.071 3.929 6 O -0.394 6.394 7 C 0.194 3.806 8 C -0.515 4.515 9 H 0.067 0.933 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.909 3.091 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.271 1.271 16 C 0.009 3.991 17 H 0.034 0.966 18 H 0.068 0.932 19 H 0.065 0.935 20 H 0.089 0.911 21 H 0.069 0.931 22 H 0.106 0.894 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.004 0.996 26 H 0.005 0.995 27 H 0.264 0.736 28 H 0.071 0.929 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 -3.313 9.504 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.007 4.007 6 O -0.314 6.314 7 C 0.120 3.880 8 C -0.553 4.553 9 H 0.085 0.915 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.736 3.264 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.119 4.119 17 H 0.052 0.948 18 H 0.087 0.913 19 H 0.084 0.916 20 H 0.107 0.893 21 H 0.087 0.913 22 H 0.124 0.876 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.725 -3.805 9.937 13.149 hybrid contribution 0.083 0.592 -1.337 1.464 sum -7.642 -3.212 8.600 11.945 Atomic orbital electron populations 1.22846 0.90085 1.02187 1.00849 1.68506 1.08689 1.18557 1.25386 1.23960 0.96996 0.91398 0.99921 1.22942 0.98530 0.96005 0.95304 1.22252 0.91668 0.95552 0.91238 1.87861 1.53416 1.49671 1.40460 1.20209 0.95515 0.89738 0.82530 1.21070 1.18170 1.07489 1.08615 0.91483 1.24958 0.97377 0.94943 0.97263 1.69965 1.42596 1.15757 1.25530 0.86324 0.81412 0.78732 0.79959 1.20451 1.21068 1.19584 1.24090 0.96820 1.00912 0.90072 0.94757 0.91325 0.91621 0.89300 0.91281 0.87598 0.94651 0.94187 0.97771 0.97684 0.92646 0.91129 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 15 2 N -0.49 -6.54 6.56 -245.65 -1.61 -8.15 15 3 C 0.01 0.08 7.55 -2.77 -0.02 0.06 15 4 C -0.11 -1.70 4.19 -89.68 -0.38 -2.07 15 5 C 0.07 1.34 5.79 37.16 0.22 1.55 15 6 O -0.39 -9.68 10.33 -35.23 -0.36 -10.04 15 7 C 0.19 5.41 5.69 36.01 0.20 5.61 15 8 C -0.52 -15.35 9.43 -34.44 -0.32 -15.67 15 9 H 0.07 1.98 7.81 -52.49 -0.41 1.57 15 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 11 N -0.90 -27.07 13.29 55.43 0.74 -26.33 15 12 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 15 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 16 C 0.01 0.14 7.54 -2.65 -0.02 0.12 15 17 H 0.03 0.36 7.62 -51.93 -0.40 -0.03 15 18 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.07 0.82 7.88 -51.93 -0.41 0.41 15 22 H 0.11 1.72 8.14 -51.93 -0.42 1.30 15 23 H 0.04 0.64 7.84 -51.93 -0.41 0.24 15 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 15 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 15 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 28 H 0.07 1.00 7.37 -51.93 -0.38 0.62 15 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 248.30 15.07 3.74 3.74 Total: -1.00 -31.07 248.30 -6.88 -37.95 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -4.52 Total: -5.67 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 0.16 Total: -8.42 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.88 Total: -34.48 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.36 Total: -10.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.07 -6.88 -37.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234980.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.617 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds