Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 C 1.53005 * 113.73242 * 138.02883 * 4 3 2 6 6 O 1.42902 * 109.46982 * 174.99990 * 5 4 3 7 7 C 1.42902 * 113.99832 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46941 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00213 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99853 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00203 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00267 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47153 * 89.99609 * 12 10 8 14 14 H 1.48496 * 109.47438 * 209.99961 * 12 10 8 15 15 H 1.48502 * 109.46916 * 330.00136 * 12 10 8 16 16 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 17 17 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 18 18 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 20 20 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 21 21 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 22 22 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 23 23 H 1.09004 * 109.46796 * 294.99318 * 5 4 3 24 24 H 1.08992 * 109.47543 * 54.99429 * 5 4 3 25 25 H 1.08995 * 109.46749 * 299.99513 * 7 6 5 26 26 H 1.08998 * 109.46911 * 59.99441 * 7 6 5 27 27 H 0.96998 * 120.00180 * 180.02562 * 11 10 8 28 28 H 1.09005 * 113.65869 * 23.13541 * 16 2 1 29 29 H 1.09002 * 113.92722 * 251.82174 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 6 3.2586 1.8621 -2.1885 6 8 4.3011 1.3648 -3.0298 7 6 4.6027 2.2094 -4.1425 8 6 5.7103 1.5916 -4.9564 9 1 6.1406 0.6482 -4.6545 10 6 6.1743 2.2307 -6.0865 11 7 5.6499 3.3794 -6.4544 12 14 7.5477 1.4654 -7.0951 13 1 6.9641 0.5819 -8.1363 14 1 8.3419 2.5387 -7.7449 15 1 8.4290 0.6669 -6.2057 16 6 2.0019 -0.2232 -1.3646 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 2.4459 1.6803 0.9483 21 1 1.3003 2.1201 -0.3924 22 1 3.9474 0.5117 -0.5975 23 1 2.3424 1.9684 -2.7695 24 1 3.5482 2.8326 -1.7860 25 1 3.7144 2.3225 -4.7639 26 1 4.9200 3.1874 -3.7807 27 1 5.9761 3.8288 -7.2497 28 1 1.3025 0.0447 -2.1566 29 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260234980.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = -43.529213 kcal Electronic energy + Delta-G solvation = -11104.158246 eV Core-core repulsion = 9027.314328 eV Total energy + Delta-G solvation = -2076.843918 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.93091 -38.31765 -34.95628 -32.34205 -29.59484 -27.39728 -27.05789 -24.50269 -23.21922 -20.64032 -18.67725 -17.49001 -17.04127 -16.61461 -16.30933 -16.05936 -15.48638 -14.74078 -14.17098 -13.68100 -13.54938 -13.33729 -12.95989 -12.74318 -12.36787 -12.28492 -11.85343 -11.71941 -11.56960 -11.28682 -10.87359 -10.27270 -9.83586 -8.33793 -6.46671 1.39957 1.42836 1.55067 2.33788 2.93171 2.99960 3.01704 3.54508 4.00835 4.13411 4.27022 4.32606 4.48589 4.55213 4.59664 4.60697 4.74460 4.85320 4.87681 4.97045 5.13898 5.26409 5.29902 5.53660 5.93651 6.04533 6.50931 6.79560 7.25530 8.78559 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.100773 B = 0.006860 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.786049 B = 4080.799434 C = 4178.627609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.497 5.497 3 C 0.019 3.981 4 C -0.114 4.114 5 C 0.065 3.935 6 O -0.410 6.410 7 C 0.208 3.792 8 C -0.552 4.552 9 H 0.062 0.938 10 C 0.006 3.994 11 N -0.930 5.930 12 Si 0.985 3.015 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.264 1.264 16 C 0.009 3.991 17 H 0.037 0.963 18 H 0.075 0.925 19 H 0.081 0.919 20 H 0.104 0.896 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.041 0.959 24 H 0.046 0.954 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.271 0.729 28 H 0.073 0.927 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 -3.795 9.746 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.220 5.220 3 C -0.110 4.110 4 C -0.133 4.133 5 C -0.013 4.013 6 O -0.330 6.330 7 C 0.133 3.867 8 C -0.589 4.589 9 H 0.080 0.920 10 C -0.192 4.192 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.189 1.189 16 C -0.120 4.120 17 H 0.056 0.944 18 H 0.094 0.906 19 H 0.100 0.900 20 H 0.122 0.878 21 H 0.100 0.900 22 H 0.115 0.885 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.807 -4.286 10.202 13.543 hybrid contribution 0.023 0.770 -1.349 1.554 sum -7.784 -3.516 8.853 12.301 Atomic orbital electron populations 1.22917 0.88347 1.03048 1.01777 1.68494 1.10490 1.18804 1.24194 1.23976 0.95916 0.91551 0.99542 1.22943 0.99178 0.96188 0.94953 1.22570 0.90275 0.96941 0.91485 1.87818 1.55452 1.49581 1.40137 1.19850 0.94415 0.89263 0.83207 1.21410 1.19522 1.07933 1.10059 0.91960 1.25983 0.99898 0.95246 0.98106 1.70066 1.43838 1.16920 1.26137 0.85159 0.77828 0.78139 0.78144 1.19210 1.19822 1.18863 1.24075 0.96599 1.00229 0.91074 0.94443 0.90607 0.90022 0.87754 0.90002 0.88508 0.94051 0.93595 0.99539 0.99502 0.91966 0.90931 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 9.65 127.69 1.23 1.00 15 2 N -0.50 -12.30 6.56 -931.09 -6.11 -18.41 15 3 C 0.02 0.44 7.55 86.41 0.65 1.09 15 4 C -0.11 -3.46 4.19 -10.15 -0.04 -3.50 15 5 C 0.06 2.43 5.79 71.98 0.42 2.85 15 6 O -0.41 -20.52 10.33 -148.98 -1.54 -22.06 15 7 C 0.21 11.88 5.69 71.24 0.41 12.29 15 8 C -0.55 -33.36 9.43 25.60 0.24 -33.12 15 9 H 0.06 3.72 7.81 -2.91 -0.02 3.70 15 10 C 0.01 0.36 5.46 84.65 0.46 0.82 15 11 N -0.93 -56.21 13.29 21.45 0.28 -55.92 15 12 Si 0.98 44.55 29.54 68.60 2.03 46.58 15 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 15 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 16 C 0.01 0.25 7.54 86.36 0.65 0.90 15 17 H 0.04 0.70 7.62 -2.39 -0.02 0.68 15 18 H 0.08 1.35 8.14 -2.38 -0.02 1.33 15 19 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 20 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.08 1.72 7.88 -2.38 -0.02 1.70 15 22 H 0.10 3.12 8.14 -2.38 -0.02 3.10 15 23 H 0.04 1.50 7.84 -2.39 -0.02 1.48 15 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 15 28 H 0.07 1.98 7.37 -2.38 -0.02 1.97 15 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -65.79 248.30 -0.22 -66.02 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.10 Total: 1.47 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.02 Total: -17.67 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -5.83 Total: -74.33 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.54 Total: -22.06 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.79 -0.22 -66.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234980.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.487 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds