Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48067 * 110.99625 * 2 1 4 4 C 1.53372 * 112.15394 * 191.79369 * 3 2 1 5 5 C 1.51032 * 111.73315 * 318.80582 * 4 3 2 6 6 O 1.43660 * 107.92140 * 91.96062 * 5 4 3 7 7 C 1.36474 * 117.39367 * 279.20175 * 6 5 4 8 8 C 1.44846 * 111.03393 * 231.93829 * 2 1 3 9 9 H 1.08997 * 109.59560 * 100.01698 * 8 2 1 10 10 C 1.50689 * 109.49727 * 339.76379 * 8 2 1 11 11 H 1.08004 * 120.00654 * 354.82472 * 10 8 2 12 12 C 1.37876 * 120.00045 * 174.82693 * 10 8 2 13 13 N 1.31521 * 120.00061 * 179.97438 * 12 10 8 14 14 Si 1.86796 * 119.99953 * 0.02562 * 12 10 8 15 15 H 1.48505 * 109.47421 * 89.99730 * 14 12 10 16 16 H 1.48507 * 109.47091 * 209.99795 * 14 12 10 17 17 H 1.48497 * 109.47010 * 329.99747 * 14 12 10 18 18 H 1.09002 * 109.47235 * 74.35235 * 1 2 3 19 19 H 1.09004 * 109.47172 * 194.35013 * 1 2 3 20 20 H 1.08998 * 109.47500 * 314.35340 * 1 2 3 21 21 H 1.08996 * 108.94697 * 71.10797 * 3 2 1 22 22 H 1.08996 * 108.87326 * 312.43114 * 3 2 1 23 23 H 1.08992 * 109.02763 * 198.22654 * 4 3 2 24 24 H 1.09002 * 108.96590 * 79.34470 * 4 3 2 25 25 H 1.08996 * 109.77628 * 332.35454 * 5 4 3 26 26 H 1.08997 * 109.77425 * 211.56593 * 5 4 3 27 27 H 1.09003 * 109.09162 * 181.84534 * 7 6 5 28 28 H 1.08996 * 109.09326 * 300.92415 * 7 6 5 29 29 H 0.97000 * 119.99703 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9995 1.3824 0.0000 4 6 3.5049 1.4241 -0.2903 5 6 4.2437 0.3192 0.4269 6 8 4.3155 -0.8109 -0.4571 7 6 3.2149 -1.6134 -0.5411 8 6 1.9889 -0.8335 -1.0645 9 1 2.2868 -0.2082 -1.9060 10 6 0.9254 -1.8047 -1.5078 11 1 -0.0160 -1.8526 -0.9805 12 6 1.1540 -2.6322 -2.5866 13 7 0.2260 -3.4802 -2.9732 14 14 2.7824 -2.5500 -3.4982 15 1 3.7432 -3.5001 -2.8821 16 1 2.5712 -2.9135 -4.9225 17 1 3.3273 -1.1712 -3.4148 18 1 -0.3634 0.2772 -0.9896 19 1 -0.3634 -0.9956 0.2547 20 1 -0.3634 0.7184 0.7348 21 1 1.8147 1.8324 0.9754 22 1 1.4762 1.9609 -0.7612 23 1 3.9027 2.3858 0.0333 24 1 3.6618 1.3179 -1.3638 25 1 3.7055 0.0440 1.3340 26 1 5.2497 0.6528 0.6813 27 1 3.4273 -2.4402 -1.2190 28 1 2.9882 -2.0124 0.4476 29 1 0.3871 -4.0627 -3.7320 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616476.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = -46.907198 kcal Electronic energy + Delta-G solvation = -12278.232424 eV Core-core repulsion = 10201.242025 eV Total energy + Delta-G solvation = -2076.990398 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.71899 -37.45989 -35.11412 -33.44623 -30.47869 -28.30339 -25.89987 -25.35019 -22.54940 -20.67671 -19.12050 -17.69075 -17.22163 -16.61747 -16.13547 -15.84038 -15.36872 -14.87784 -14.15176 -13.87407 -13.75078 -13.19455 -12.81036 -12.72133 -12.39808 -11.94212 -11.78877 -11.53560 -11.43723 -10.99796 -10.86826 -10.29060 -8.97190 -8.34257 -6.39430 1.26395 1.31305 1.43164 2.26242 2.95956 3.05948 3.18427 4.01960 4.10786 4.28776 4.40821 4.56184 4.62218 4.70999 4.77866 4.83455 4.89512 4.94832 5.12838 5.18882 5.25594 5.31160 5.43794 5.99942 6.30910 6.56443 6.69356 6.86039 7.27509 8.78935 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.019414 C = 0.014894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.734295 B = 1441.922453 C = 1879.467684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.559 5.559 3 C 0.055 3.945 4 C -0.152 4.152 5 C 0.067 3.933 6 O -0.411 6.411 7 C 0.084 3.916 8 C 0.162 3.838 9 H -0.003 1.003 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.025 3.975 13 N -0.937 5.937 14 Si 0.927 3.073 15 H -0.263 1.263 16 H -0.289 1.289 17 H -0.257 1.257 18 H 0.006 0.994 19 H 0.053 0.947 20 H 0.073 0.927 21 H 0.094 0.906 22 H 0.023 0.977 23 H 0.113 0.887 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 9.447 6.015 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.284 5.284 3 C -0.072 4.072 4 C -0.189 4.189 5 C -0.008 4.008 6 O -0.331 6.331 7 C 0.006 3.994 8 C 0.053 3.947 9 H 0.015 0.985 10 C -0.574 4.574 11 H 0.090 0.910 12 C -0.174 4.174 13 N -0.577 5.577 14 Si 0.753 3.247 15 H -0.189 1.189 16 H -0.216 1.216 17 H -0.182 1.182 18 H 0.025 0.975 19 H 0.072 0.928 20 H 0.092 0.908 21 H 0.112 0.888 22 H 0.041 0.959 23 H 0.131 0.869 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.159 9.095 6.200 13.130 hybrid contribution -0.307 -0.114 -1.448 1.485 sum 6.852 8.981 4.751 12.255 Atomic orbital electron populations 1.22061 0.87256 1.01076 0.98494 1.60796 1.08145 1.11965 1.47487 1.22489 0.95089 0.88240 1.01385 1.22061 0.94693 1.01428 1.00761 1.22593 1.01617 0.84423 0.92139 1.86336 1.39025 1.41306 1.66387 1.22009 0.85849 0.92163 0.99393 1.20107 0.93848 0.91997 0.88774 0.98506 1.21804 1.02194 1.19505 1.13885 0.90977 1.25686 0.99485 0.94587 0.97610 1.69994 1.35656 1.24007 1.28011 0.86147 0.80967 0.79945 0.77617 1.18905 1.21553 1.18163 0.97511 0.92792 0.90848 0.88767 0.95861 0.86863 0.93602 0.91914 0.86525 0.91935 0.94502 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.38 8.29 127.69 1.06 3.44 15 2 N -0.56 -23.06 4.17 -899.74 -3.75 -26.81 15 3 C 0.05 1.77 5.42 86.20 0.47 2.23 15 4 C -0.15 -4.41 5.39 30.08 0.16 -4.25 15 5 C 0.07 2.04 6.49 71.34 0.46 2.51 15 6 O -0.41 -16.76 10.03 -99.01 -0.99 -17.75 15 7 C 0.08 3.88 5.27 72.47 0.38 4.26 15 8 C 0.16 7.87 1.55 45.04 0.07 7.94 15 9 H 0.00 -0.14 5.68 -2.39 -0.01 -0.15 15 10 C -0.54 -30.41 8.07 25.60 0.21 -30.20 15 11 H 0.07 4.36 5.14 -2.91 -0.01 4.34 15 12 C 0.03 1.48 5.44 84.65 0.46 1.94 15 13 N -0.94 -57.92 13.96 21.45 0.30 -57.63 15 14 Si 0.93 45.92 24.73 68.60 1.70 47.62 15 15 H -0.26 -12.54 6.84 99.48 0.68 -11.86 15 16 H -0.29 -14.00 7.11 99.48 0.71 -13.30 15 17 H -0.26 -12.55 6.39 99.48 0.64 -11.92 15 18 H 0.01 0.28 7.73 -2.39 -0.02 0.26 15 19 H 0.05 2.41 6.19 -2.39 -0.01 2.40 15 20 H 0.07 2.36 8.02 -2.39 -0.02 2.34 15 21 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 22 H 0.02 0.76 8.04 -2.39 -0.02 0.74 15 23 H 0.11 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.05 1.57 7.28 -2.39 -0.02 1.55 15 25 H 0.06 1.91 7.61 -2.39 -0.02 1.89 15 26 H 0.12 2.67 8.14 -2.39 -0.02 2.65 15 27 H 0.06 3.07 4.28 -2.39 -0.01 3.06 15 28 H 0.04 1.67 8.12 -2.39 -0.02 1.66 15 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 Total: -1.00 -65.08 219.98 1.55 -63.54 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.03 Total: 3.17 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.27 Total: -12.13 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.45 Total: -84.44 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.99 Total: -17.75 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.70 Total: 47.62 kcal Total: -65.08 1.55 -63.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616476.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.631 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds