Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99537 * 2 1 4 4 C 1.50700 * 109.53416 * 59.42461 * 3 2 1 5 5 H 1.08002 * 120.00212 * 235.14909 * 4 3 2 6 6 C 1.37877 * 120.00119 * 55.14840 * 4 3 2 7 7 N 1.31518 * 119.99911 * 354.41473 * 6 4 3 8 8 Si 1.86804 * 120.00257 * 174.40806 * 6 4 3 9 9 H 1.48493 * 109.46781 * 60.00264 * 8 6 4 10 10 H 1.48493 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46904 * 300.00461 * 8 6 4 12 12 C 1.53127 * 109.51095 * 299.33401 * 3 2 1 13 13 C 1.53119 * 109.15114 * 297.72051 * 12 3 2 14 14 C 1.53037 * 109.28114 * 302.34499 * 13 12 3 15 15 N 1.46847 * 109.52301 * 59.17803 * 14 13 12 16 16 C 1.46847 * 111.19808 * 298.25530 * 15 14 13 17 17 H 1.08995 * 109.47210 * 65.95894 * 1 2 3 18 18 H 1.09005 * 109.46650 * 185.95558 * 1 2 3 19 19 H 1.08997 * 109.47224 * 305.95056 * 1 2 3 20 20 H 0.96998 * 119.99880 * 179.97438 * 7 6 4 21 21 H 1.09006 * 109.52891 * 177.81775 * 12 3 2 22 22 H 1.09001 * 109.57401 * 57.65594 * 12 3 2 23 23 H 1.08998 * 109.50005 * 182.39923 * 13 12 3 24 24 H 1.09002 * 109.49738 * 62.28280 * 13 12 3 25 25 H 1.08998 * 109.45910 * 299.15741 * 14 13 12 26 26 H 1.09000 * 109.44903 * 179.19118 * 14 13 12 27 27 H 1.00893 * 111.00243 * 62.35946 * 15 14 13 28 28 H 1.09001 * 109.46371 * 181.75825 * 16 15 14 29 29 H 1.08996 * 109.46419 * 301.74310 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5551 2.0597 1.2228 5 1 1.0761 3.0219 1.1167 6 6 1.7501 1.5213 2.4770 7 7 2.2321 0.3041 2.6025 8 14 1.3298 2.5208 3.9982 9 1 -0.1134 2.8696 3.9780 10 1 1.6295 1.7221 5.2136 11 1 2.1397 3.7653 4.0120 12 6 1.5721 2.0603 -1.2583 13 6 2.0898 1.3193 -2.4942 14 6 3.6131 1.1988 -2.4101 15 7 3.9809 0.4691 -1.1900 16 6 3.5358 1.1857 0.0120 17 1 -0.3633 0.4186 -0.9385 18 1 -0.3633 -1.0222 0.1066 19 1 -0.3633 0.6033 0.8319 20 1 2.3696 -0.0745 3.4849 21 1 1.9837 3.0695 -1.2396 22 1 0.4839 2.1113 -1.2933 23 1 1.8176 1.8746 -3.3918 24 1 1.6476 0.3238 -2.5333 25 1 4.0553 2.1948 -2.3849 26 1 3.9832 0.6591 -3.2817 27 1 3.6151 -0.4710 -1.2068 28 1 3.8499 0.6365 0.8995 29 1 3.9782 2.1817 0.0257 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260888331.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = -50.945124 kcal Electronic energy + Delta-G solvation = -12368.488629 eV Core-core repulsion = 10291.323133 eV Total energy + Delta-G solvation = -2077.165496 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.43708 -34.90475 -32.44850 -30.56598 -29.18376 -25.35907 -24.87817 -22.38416 -21.24606 -18.88498 -16.62166 -15.09865 -14.73435 -14.55999 -14.15578 -13.62628 -13.26504 -12.51759 -12.01821 -11.85974 -11.60366 -10.99324 -10.90883 -10.78780 -10.43481 -10.34589 -10.14861 -10.08153 -9.41934 -9.17026 -8.55338 -7.80810 -7.28500 -5.98303 -4.15970 3.27673 3.33696 3.35948 4.37705 5.12507 5.35363 5.52991 5.70232 5.81394 5.91480 6.31344 6.36899 6.38696 6.48620 6.60625 6.73765 6.81222 6.89901 7.06409 7.07499 7.25673 7.69910 7.86299 7.95120 8.21494 8.41632 8.78484 9.08420 9.55467 11.01528 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053073 B = 0.015774 C = 0.014893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.446266 B = 1774.653337 C = 1879.593038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.209 3.791 4 C -0.558 4.558 5 H 0.053 0.947 6 C 0.083 3.917 7 N -0.851 5.851 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.276 1.276 12 C -0.138 4.138 13 C -0.152 4.152 14 C 0.061 3.939 15 N -0.694 5.694 16 C 0.083 3.917 17 H 0.006 0.994 18 H 0.048 0.952 19 H 0.045 0.955 20 H 0.260 0.740 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.340 0.660 28 H 0.096 0.904 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 0.932 -5.488 5.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.289 6.289 3 C 0.169 3.831 4 C -0.597 4.597 5 H 0.072 0.928 6 C -0.124 4.124 7 N -0.486 5.486 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.176 4.176 13 C -0.191 4.191 14 C -0.070 4.070 15 N -0.322 5.322 16 C -0.046 4.046 17 H 0.025 0.975 18 H 0.067 0.933 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.114 0.886 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.291 0.869 -5.331 5.409 hybrid contribution -1.615 0.739 0.869 1.977 sum -1.324 1.607 -4.462 4.924 Atomic orbital electron populations 1.22142 0.84762 0.99086 0.98121 1.87779 1.16825 1.29865 1.94424 1.19657 0.91881 0.81203 0.90349 1.21379 1.41986 1.05232 0.91083 0.92850 1.24992 0.94274 0.94437 0.98681 1.70069 1.42262 1.13167 1.23101 0.86817 0.78900 0.80500 0.82700 1.20366 1.21170 1.20128 1.22178 0.99920 0.99209 0.96338 1.22200 0.98239 1.00769 0.97929 1.21901 0.93078 0.98632 0.93348 1.60824 1.62762 1.06303 1.02334 1.21969 0.92974 0.97678 0.92008 0.97520 0.93302 0.93660 0.92986 0.92812 0.93190 0.93632 0.92247 0.92134 0.92448 0.84252 0.88624 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 10.25 101.05 1.04 2.31 15 2 O -0.37 -9.30 8.27 -35.23 -0.29 -9.59 15 3 C 0.21 5.09 0.32 -91.69 -0.03 5.06 15 4 C -0.56 -14.94 6.64 -34.44 -0.23 -15.17 15 5 H 0.05 1.44 7.75 -52.49 -0.41 1.03 15 6 C 0.08 2.22 5.18 -17.82 -0.09 2.13 15 7 N -0.85 -23.74 11.17 55.43 0.62 -23.12 15 8 Si 0.88 20.82 29.54 -169.99 -5.02 15.79 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 12 C -0.14 -2.96 4.44 -26.60 -0.12 -3.08 15 13 C -0.15 -2.81 5.92 -26.65 -0.16 -2.97 15 14 C 0.06 1.10 6.55 -3.83 -0.03 1.07 15 15 N -0.69 -14.41 6.86 -113.82 -0.78 -15.19 15 16 C 0.08 1.97 5.38 -3.83 -0.02 1.95 15 17 H 0.01 0.13 6.70 -51.93 -0.35 -0.21 15 18 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.04 1.10 6.91 -51.93 -0.36 0.74 15 20 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 21 H 0.05 1.14 8.14 -51.93 -0.42 0.71 15 22 H 0.05 1.07 6.58 -51.93 -0.34 0.73 15 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 15 24 H 0.06 1.14 7.80 -51.93 -0.40 0.73 15 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 27 H 0.34 7.18 8.38 -39.30 -0.33 6.85 15 28 H 0.10 2.55 6.72 -51.93 -0.35 2.20 15 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 15 LS Contribution 229.85 15.07 3.46 3.46 Total: -1.00 -27.56 229.85 -5.86 -33.42 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.21 Total: 3.92 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.36 Total: -8.70 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.16 Total: -38.31 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.29 Total: -9.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.56 -5.86 -33.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888331.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.524 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds