Wall clock time and date at job start Mon Mar 30 2020 02:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99956 * 2 1 4 4 C 1.52993 * 109.47349 * 66.04459 * 3 2 1 5 5 C 1.50690 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.08011 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00702 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99905 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00386 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47293 * 60.00229 * 9 7 5 11 11 H 1.48498 * 109.47138 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47159 * 299.99765 * 9 7 5 13 13 C 1.46900 * 111.00247 * 236.04176 * 2 1 3 14 14 C 1.54033 * 113.92640 * 205.55497 * 13 2 1 15 15 O 1.44180 * 85.51695 * 136.81826 * 14 13 2 16 16 C 1.44178 * 93.33776 * 335.80740 * 15 14 13 17 17 H 1.09001 * 109.46897 * 183.95487 * 1 2 3 18 18 H 1.08998 * 109.46911 * 303.95660 * 1 2 3 19 19 H 1.09005 * 109.46614 * 63.95919 * 1 2 3 20 20 H 1.09000 * 109.46531 * 186.04565 * 3 2 1 21 21 H 1.08996 * 109.46667 * 306.04292 * 3 2 1 22 22 H 1.09003 * 109.47261 * 300.00338 * 4 3 2 23 23 H 1.09005 * 109.47132 * 59.99711 * 4 3 2 24 24 H 0.96992 * 120.00251 * 179.97438 * 8 7 5 25 25 H 1.09002 * 112.99928 * 73.62242 * 13 2 1 26 26 H 1.08997 * 113.86582 * 250.96540 * 14 13 2 27 27 H 1.09004 * 113.86499 * 22.67061 * 14 13 2 28 28 H 1.09003 * 113.86222 * 270.03964 * 16 15 14 29 29 H 1.09000 * 113.98005 * 138.36086 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1709 3.4645 1.3179 6 1 2.7191 3.8326 0.4631 7 6 1.9649 4.2822 2.4088 8 7 1.2979 3.8339 3.4499 9 14 2.6343 6.0261 2.4087 10 1 2.0430 6.7832 1.2762 11 1 2.2809 6.6920 3.6881 12 1 4.1115 5.9893 2.2620 13 6 1.9955 -0.7661 -1.1375 14 6 3.4053 -1.3413 -0.9044 15 8 2.8913 -2.5445 -1.5102 16 6 1.5252 -2.2324 -1.1709 17 1 -0.3633 -1.0252 0.0709 18 1 -0.3633 0.5740 0.8524 19 1 -0.3633 0.4512 -0.9234 20 1 3.0797 1.3443 -0.1082 21 1 1.5611 1.9273 -0.8309 22 1 0.5472 2.0845 1.4264 23 1 2.0658 1.5016 2.1491 24 1 1.1532 4.4089 4.2175 25 1 1.8840 -0.2463 -2.0891 26 1 4.1838 -0.8511 -1.4888 27 1 3.6670 -1.4543 0.1477 28 1 1.2129 -2.6177 -0.2002 29 1 0.8110 -2.4486 -1.9654 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260976816.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:49 Heat of formation + Delta-G solvation = -14.292869 kcal Electronic energy + Delta-G solvation = -11371.532491 eV Core-core repulsion = 9295.956356 eV Total energy + Delta-G solvation = -2075.576135 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.20691 -36.28777 -32.98792 -29.97743 -28.18024 -26.64780 -25.32535 -23.44452 -20.27605 -19.67715 -16.74909 -16.26218 -15.77410 -15.57687 -14.50437 -14.24248 -13.77717 -12.84744 -12.61168 -12.44898 -12.14574 -11.50895 -11.18700 -10.95966 -10.92385 -10.62214 -10.50462 -9.89958 -9.62268 -9.29549 -9.15565 -8.34832 -7.86888 -6.01314 -4.04092 3.32361 3.36925 3.39079 3.86324 4.33094 4.41476 4.53265 5.18958 5.34235 5.34493 5.56904 5.59751 5.66930 5.86542 6.03876 6.15380 6.17992 6.27384 6.41025 6.46656 6.91855 7.39417 7.47454 7.74545 7.85677 8.04704 8.40773 9.02782 9.59705 11.10030 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.078898 B = 0.008154 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.804753 B = 3433.276625 C = 3614.531722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.061 3.939 4 C 0.028 3.972 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.009 3.991 14 C 0.049 3.951 15 O -0.389 6.389 16 C 0.044 3.956 17 H 0.057 0.943 18 H 0.082 0.918 19 H 0.019 0.981 20 H 0.061 0.939 21 H 0.021 0.979 22 H 0.018 0.982 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -7.898 -7.403 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.066 4.066 4 C -0.009 4.009 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.101 4.101 14 C -0.028 4.028 15 O -0.307 6.307 16 C -0.033 4.033 17 H 0.076 0.924 18 H 0.100 0.900 19 H 0.037 0.963 20 H 0.079 0.921 21 H 0.039 0.961 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.069 -8.303 -6.940 10.821 hybrid contribution -0.050 1.629 -0.610 1.740 sum 0.019 -6.674 -7.550 10.077 Atomic orbital electron populations 1.22362 0.87753 1.01075 1.01223 1.62480 1.07891 1.16474 1.39165 1.22360 0.98646 0.84989 1.00598 1.19095 0.96952 0.94060 0.90816 1.21149 1.35340 0.97781 1.02006 0.92861 1.24986 0.95243 0.98476 0.95524 1.69958 1.40714 1.36541 1.06026 0.86649 0.79467 0.84621 0.77200 1.20300 1.21258 1.20204 1.25001 0.95952 0.94697 0.94423 1.24043 0.96005 0.83507 0.99283 1.89622 1.20222 1.44228 1.76600 1.24033 0.85578 0.92795 1.00905 0.92431 0.89952 0.96283 0.92086 0.96085 0.96403 0.95683 0.92903 0.91266 0.89552 0.89001 0.89422 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.16 60.07 0.55 0.94 15 2 N -0.53 -9.57 4.73 -242.85 -1.15 -10.72 15 3 C 0.06 1.27 4.87 -3.83 -0.02 1.25 15 4 C 0.03 0.73 4.90 -27.89 -0.14 0.59 15 5 C -0.52 -14.77 9.11 -34.45 -0.31 -15.09 15 6 H 0.05 1.45 7.74 -52.48 -0.41 1.05 15 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 8 N -0.89 -26.76 13.29 55.43 0.74 -26.03 15 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 15 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 13 C 0.01 0.13 3.40 -66.64 -0.23 -0.10 15 14 C 0.05 0.71 8.78 37.61 0.33 1.04 15 15 O -0.39 -5.93 12.45 -35.23 -0.44 -6.37 15 16 C 0.04 0.58 7.84 37.61 0.29 0.88 15 17 H 0.06 0.79 7.13 -51.93 -0.37 0.42 15 18 H 0.08 1.51 6.30 -51.93 -0.33 1.18 15 19 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 15 20 H 0.06 1.25 7.89 -51.93 -0.41 0.84 15 21 H 0.02 0.44 8.12 -51.93 -0.42 0.02 15 22 H 0.02 0.48 6.47 -51.93 -0.34 0.14 15 23 H 0.02 0.70 8.14 -51.93 -0.42 0.27 15 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 28 H 0.09 1.14 7.92 -51.93 -0.41 0.73 15 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 LS Contribution 243.59 15.07 3.67 3.67 Total: -1.00 -30.07 243.59 -6.17 -36.24 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.35 Total: -4.44 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 0.38 Total: -8.89 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.41 Total: -36.75 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.44 Total: -6.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.07 -6.17 -36.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260976816.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.950 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds