Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99956 * 2 1 4 4 C 1.52993 * 109.47349 * 66.04459 * 3 2 1 5 5 C 1.50690 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.08011 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00702 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99905 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00386 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47293 * 60.00229 * 9 7 5 11 11 H 1.48498 * 109.47138 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47159 * 299.99765 * 9 7 5 13 13 C 1.46900 * 111.00247 * 236.04176 * 2 1 3 14 14 C 1.54033 * 113.92640 * 205.55497 * 13 2 1 15 15 O 1.44180 * 85.51695 * 136.81826 * 14 13 2 16 16 C 1.44178 * 93.33776 * 335.80740 * 15 14 13 17 17 H 1.09001 * 109.46897 * 183.95487 * 1 2 3 18 18 H 1.08998 * 109.46911 * 303.95660 * 1 2 3 19 19 H 1.09005 * 109.46614 * 63.95919 * 1 2 3 20 20 H 1.09000 * 109.46531 * 186.04565 * 3 2 1 21 21 H 1.08996 * 109.46667 * 306.04292 * 3 2 1 22 22 H 1.09003 * 109.47261 * 300.00338 * 4 3 2 23 23 H 1.09005 * 109.47132 * 59.99711 * 4 3 2 24 24 H 0.96992 * 120.00251 * 179.97438 * 8 7 5 25 25 H 1.09002 * 112.99928 * 73.62242 * 13 2 1 26 26 H 1.08997 * 113.86582 * 250.96540 * 14 13 2 27 27 H 1.09004 * 113.86499 * 22.67061 * 14 13 2 28 28 H 1.09003 * 113.86222 * 270.03964 * 16 15 14 29 29 H 1.09000 * 113.98005 * 138.36086 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1709 3.4645 1.3179 6 1 2.7191 3.8326 0.4631 7 6 1.9649 4.2822 2.4088 8 7 1.2979 3.8339 3.4499 9 14 2.6343 6.0261 2.4087 10 1 2.0430 6.7832 1.2762 11 1 2.2809 6.6920 3.6881 12 1 4.1115 5.9893 2.2620 13 6 1.9955 -0.7661 -1.1375 14 6 3.4053 -1.3413 -0.9044 15 8 2.8913 -2.5445 -1.5102 16 6 1.5252 -2.2324 -1.1709 17 1 -0.3633 -1.0252 0.0709 18 1 -0.3633 0.5740 0.8524 19 1 -0.3633 0.4512 -0.9234 20 1 3.0797 1.3443 -0.1082 21 1 1.5611 1.9273 -0.8309 22 1 0.5472 2.0845 1.4264 23 1 2.0658 1.5016 2.1491 24 1 1.1532 4.4089 4.2175 25 1 1.8840 -0.2463 -2.0891 26 1 4.1838 -0.8511 -1.4888 27 1 3.6670 -1.4543 0.1477 28 1 1.2129 -2.6177 -0.2002 29 1 0.8110 -2.4486 -1.9654 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260976816.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = -36.121862 kcal Electronic energy + Delta-G solvation = -11372.479067 eV Core-core repulsion = 9295.956356 eV Total energy + Delta-G solvation = -2076.522711 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.37558 -37.78931 -35.06129 -31.82330 -29.46534 -28.02444 -26.80213 -25.20998 -22.01804 -20.93620 -18.66525 -17.42629 -17.27130 -16.81546 -16.46975 -15.74991 -15.26819 -14.40104 -14.21524 -13.90280 -13.54827 -13.26682 -12.86005 -12.66283 -12.57955 -12.15824 -11.92565 -11.72718 -11.29479 -11.17015 -10.66979 -10.52882 -9.28887 -8.19566 -6.30946 1.41094 1.43978 1.51883 2.40702 2.75478 3.04271 3.14020 3.27431 4.05483 4.24194 4.30456 4.43768 4.48517 4.57482 4.64747 4.74995 4.93737 5.00408 5.05672 5.11978 5.15837 5.46188 5.64149 5.77601 6.05083 6.22140 6.30330 6.86109 7.38264 8.92324 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.078898 B = 0.008154 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.804753 B = 3433.276625 C = 3614.531722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.077 3.923 4 C 0.035 3.965 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.004 3.996 14 C 0.048 3.952 15 O -0.401 6.401 16 C 0.052 3.948 17 H 0.087 0.913 18 H 0.053 0.947 19 H 0.028 0.972 20 H 0.064 0.936 21 H 0.022 0.978 22 H -0.003 1.003 23 H -0.007 1.007 24 H 0.264 0.736 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -7.834 -8.641 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.050 4.050 4 C -0.002 4.002 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.105 4.105 14 C -0.029 4.029 15 O -0.320 6.320 16 C -0.025 4.025 17 H 0.106 0.894 18 H 0.072 0.928 19 H 0.047 0.953 20 H 0.082 0.918 21 H 0.040 0.960 22 H 0.015 0.985 23 H 0.011 0.989 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.401 -8.256 -8.196 11.640 hybrid contribution -0.183 1.542 -0.220 1.569 sum 0.218 -6.714 -8.416 10.768 Atomic orbital electron populations 1.22356 0.86868 1.02589 1.00410 1.62380 1.08842 1.14655 1.41239 1.21983 0.98892 0.86575 0.97556 1.18928 0.95187 0.93634 0.92456 1.21604 1.35478 0.99007 1.02393 0.92196 1.25941 0.95373 1.03186 0.95021 1.70097 1.41955 1.38330 1.06768 0.85500 0.79118 0.78915 0.77501 1.19185 1.20882 1.19140 1.25132 0.96542 0.95296 0.93506 1.24093 0.96244 0.83359 0.99230 1.89616 1.21250 1.44443 1.76683 1.24161 0.85370 0.90815 1.02150 0.89415 0.92798 0.95320 0.91753 0.96025 0.98503 0.98879 0.92746 0.90491 0.88060 0.89756 0.89116 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.16 127.69 1.17 1.98 15 2 N -0.55 -19.03 4.73 -933.27 -4.42 -23.45 15 3 C 0.08 3.22 4.87 86.30 0.42 3.64 15 4 C 0.04 1.87 4.90 29.84 0.15 2.02 15 5 C -0.55 -31.04 9.11 25.60 0.23 -30.81 15 6 H 0.06 3.24 7.74 -2.90 -0.02 3.22 15 7 C 0.00 0.17 5.46 84.65 0.46 0.63 15 8 N -0.93 -56.74 13.29 21.45 0.28 -56.46 15 9 Si 0.97 44.00 29.54 68.60 2.03 46.03 15 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 13 C 0.00 0.11 3.40 45.61 0.16 0.27 15 14 C 0.05 1.30 8.78 72.27 0.63 1.94 15 15 O -0.40 -11.32 12.45 -148.98 -1.86 -13.18 15 16 C 0.05 1.23 7.84 72.27 0.57 1.79 15 17 H 0.09 2.21 7.13 -2.39 -0.02 2.19 15 18 H 0.05 2.00 6.30 -2.39 -0.02 1.99 15 19 H 0.03 0.84 8.14 -2.38 -0.02 0.82 15 20 H 0.06 2.61 7.89 -2.39 -0.02 2.59 15 21 H 0.02 0.89 8.12 -2.39 -0.02 0.87 15 22 H 0.00 -0.19 6.47 -2.39 -0.02 -0.20 15 23 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 15 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 28 H 0.09 2.11 7.92 -2.39 -0.02 2.10 15 29 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 Total: -1.00 -63.99 243.59 0.94 -63.06 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.11 Total: 2.54 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.79 Total: -18.54 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -4.13 Total: -79.91 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.86 Total: -13.18 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -63.99 0.94 -63.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260976816.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.937 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds