Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47012 * 110.99963 * 2 1 4 4 C 1.53106 * 109.25845 * 177.60865 * 3 2 1 5 5 O 1.43015 * 109.25490 * 56.84835 * 4 3 2 6 6 C 1.43011 * 113.73875 * 301.32863 * 5 4 3 7 7 C 1.47013 * 110.99894 * 236.36808 * 2 1 3 8 8 H 1.08997 * 109.51038 * 62.45689 * 7 2 1 9 9 C 1.53004 * 109.50317 * 302.36819 * 7 2 1 10 10 C 1.50699 * 109.47066 * 174.94445 * 9 7 2 11 11 H 1.08000 * 119.99705 * 354.93679 * 10 9 7 12 12 C 1.37875 * 120.00215 * 174.92711 * 10 9 7 13 13 N 1.31518 * 119.99985 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00114 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47279 * 60.00592 * 14 12 10 16 16 H 1.48508 * 109.46817 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46912 * 300.00104 * 14 12 10 18 18 H 1.08994 * 109.47218 * 189.97210 * 1 2 3 19 19 H 1.09002 * 109.47330 * 69.96255 * 1 2 3 20 20 H 1.09006 * 109.46590 * 309.96794 * 1 2 3 21 21 H 1.09003 * 109.50924 * 297.54410 * 3 2 1 22 22 H 1.08996 * 109.50899 * 57.67838 * 3 2 1 23 23 H 1.09004 * 109.50193 * 296.91319 * 4 3 2 24 24 H 1.09002 * 109.54098 * 176.80467 * 4 3 2 25 25 H 1.08999 * 109.50998 * 298.73971 * 6 5 4 26 26 H 1.09000 * 109.50730 * 178.61011 * 6 5 4 27 27 H 1.08999 * 109.47418 * 294.94435 * 9 7 2 28 28 H 1.09001 * 109.47305 * 54.94804 * 9 7 2 29 29 H 0.96992 * 120.00135 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0404 6 6 3.5250 -0.7849 -1.0709 7 6 1.9958 -0.7602 -1.1428 8 1 1.6828 -0.2842 -2.0720 9 6 1.4581 -2.1918 -1.0955 10 6 1.8970 -2.9343 -2.3312 11 1 2.4290 -2.4136 -3.1136 12 6 1.6196 -4.2784 -2.4629 13 7 0.9714 -4.9125 -1.5103 14 14 2.1643 -5.1989 -3.9943 15 1 3.6422 -5.1241 -4.1174 16 1 1.7470 -6.6205 -3.8920 17 1 1.5360 -4.5840 -5.1912 18 1 -0.3633 -1.0121 0.1779 19 1 -0.3634 0.3521 -0.9655 20 1 -0.3633 0.6602 0.7877 21 1 1.6827 1.8826 -0.9110 22 1 1.6135 1.9092 0.8682 23 1 3.8385 0.8643 0.9965 24 1 3.9228 2.3396 0.0033 25 1 3.8385 -1.3084 -0.1677 26 1 3.9222 -1.2985 -1.9465 27 1 1.8464 -2.6968 -0.2111 28 1 0.3691 -2.1697 -1.0526 29 1 0.7765 -5.8581 -1.6027 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994314.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -48.022160 kcal Electronic energy + Delta-G solvation = -11798.628304 eV Core-core repulsion = 9721.589558 eV Total energy + Delta-G solvation = -2077.038747 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.07652 -35.37069 -33.32540 -31.24538 -28.55420 -26.78374 -23.98387 -23.51122 -21.39990 -19.23071 -16.56779 -15.79970 -15.54767 -14.63704 -14.49045 -14.32178 -13.77664 -13.25326 -12.43512 -12.07867 -11.90225 -11.49471 -11.30762 -10.93016 -10.85571 -10.49519 -10.31066 -10.01808 -9.44192 -9.22916 -8.88891 -8.35744 -7.78597 -6.03308 -4.06305 3.32488 3.36937 3.39466 4.32000 4.39526 4.53705 5.30309 5.32285 5.46703 5.54297 5.67615 5.87408 5.92230 6.03303 6.08487 6.14252 6.40262 6.47436 6.69990 6.80873 7.43323 7.51297 7.64555 7.73730 7.79369 8.00982 8.37338 8.99745 9.57786 11.07853 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.056345 B = 0.011509 C = 0.010086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.819627 B = 2432.361393 C = 2775.432891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.541 5.541 3 C 0.017 3.983 4 C 0.065 3.935 5 O -0.398 6.398 6 C 0.077 3.923 7 C 0.056 3.944 8 H 0.036 0.964 9 C 0.032 3.968 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.080 0.920 19 H 0.021 0.979 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.029 0.971 28 H 0.020 0.980 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 9.374 2.628 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.266 5.266 3 C -0.112 4.112 4 C -0.012 4.012 5 O -0.316 6.316 6 C 0.001 3.999 7 C -0.052 4.052 8 H 0.054 0.946 9 C -0.005 4.005 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.720 3.280 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 H 0.098 0.902 19 H 0.040 0.960 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.926 9.034 2.972 9.704 hybrid contribution -0.343 -0.279 -1.345 1.416 sum 1.583 8.755 1.627 9.045 Atomic orbital electron populations 1.22344 0.87564 1.02895 0.99137 1.62291 1.07975 1.11718 1.44642 1.22754 0.96617 0.91257 1.00536 1.22539 0.92395 0.95831 0.90448 1.87920 1.70263 1.25450 1.48008 1.22782 0.93017 0.81309 1.02795 1.22531 0.95099 0.97954 0.89605 0.94586 1.19137 0.96337 0.87289 0.97733 1.21152 1.37155 0.94265 1.03749 0.92613 1.24985 0.95106 0.97657 0.96386 1.69955 1.40325 1.10008 1.32834 0.86651 0.79178 0.78743 0.83419 1.20104 1.21263 1.20261 0.90174 0.96048 0.92634 0.94811 0.90676 0.92829 0.89493 0.92819 0.87660 0.95245 0.96189 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.01 60.07 0.54 1.04 15 2 N -0.54 -10.37 4.80 -234.57 -1.12 -11.49 15 3 C 0.02 0.27 5.64 -3.71 -0.02 0.25 15 4 C 0.07 1.01 7.01 37.21 0.26 1.27 15 5 O -0.40 -7.59 10.83 -35.23 -0.38 -7.97 15 6 C 0.08 1.60 6.05 37.21 0.23 1.82 15 7 C 0.06 1.22 1.98 -67.60 -0.13 1.09 15 8 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 9 C 0.03 0.84 4.30 -27.88 -0.12 0.72 15 10 C -0.52 -14.56 8.36 -34.44 -0.29 -14.85 15 11 H 0.06 1.50 7.27 -52.49 -0.38 1.12 15 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 13 N -0.89 -26.50 13.29 55.43 0.74 -25.76 15 14 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 18 H 0.08 1.53 6.53 -51.93 -0.34 1.19 15 19 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 15 20 H 0.05 0.81 8.04 -51.93 -0.42 0.39 15 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.07 1.00 8.09 -51.93 -0.42 0.58 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 15 26 H 0.11 2.23 7.19 -51.93 -0.37 1.86 15 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.02 0.54 6.24 -51.93 -0.32 0.21 15 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 236.21 15.07 3.56 3.56 Total: -1.00 -29.78 236.21 -6.21 -35.99 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.35 Total: -3.72 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 0.37 Total: -7.05 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.39 Total: -37.25 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.38 Total: -7.97 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.78 -6.21 -35.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994314.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.031 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds