Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47012 * 110.99963 * 2 1 4 4 C 1.53106 * 109.25845 * 177.60865 * 3 2 1 5 5 O 1.43015 * 109.25490 * 56.84835 * 4 3 2 6 6 C 1.43011 * 113.73875 * 301.32863 * 5 4 3 7 7 C 1.47013 * 110.99894 * 236.36808 * 2 1 3 8 8 H 1.08997 * 109.51038 * 62.45689 * 7 2 1 9 9 C 1.53004 * 109.50317 * 302.36819 * 7 2 1 10 10 C 1.50699 * 109.47066 * 174.94445 * 9 7 2 11 11 H 1.08000 * 119.99705 * 354.93679 * 10 9 7 12 12 C 1.37875 * 120.00215 * 174.92711 * 10 9 7 13 13 N 1.31518 * 119.99985 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00114 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47279 * 60.00592 * 14 12 10 16 16 H 1.48508 * 109.46817 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46912 * 300.00104 * 14 12 10 18 18 H 1.08994 * 109.47218 * 189.97210 * 1 2 3 19 19 H 1.09002 * 109.47330 * 69.96255 * 1 2 3 20 20 H 1.09006 * 109.46590 * 309.96794 * 1 2 3 21 21 H 1.09003 * 109.50924 * 297.54410 * 3 2 1 22 22 H 1.08996 * 109.50899 * 57.67838 * 3 2 1 23 23 H 1.09004 * 109.50193 * 296.91319 * 4 3 2 24 24 H 1.09002 * 109.54098 * 176.80467 * 4 3 2 25 25 H 1.08999 * 109.50998 * 298.73971 * 6 5 4 26 26 H 1.09000 * 109.50730 * 178.61011 * 6 5 4 27 27 H 1.08999 * 109.47418 * 294.94435 * 9 7 2 28 28 H 1.09001 * 109.47305 * 54.94804 * 9 7 2 29 29 H 0.96992 * 120.00135 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0404 6 6 3.5250 -0.7849 -1.0709 7 6 1.9958 -0.7602 -1.1428 8 1 1.6828 -0.2842 -2.0720 9 6 1.4581 -2.1918 -1.0955 10 6 1.8970 -2.9343 -2.3312 11 1 2.4290 -2.4136 -3.1136 12 6 1.6196 -4.2784 -2.4629 13 7 0.9714 -4.9125 -1.5103 14 14 2.1643 -5.1989 -3.9943 15 1 3.6422 -5.1241 -4.1174 16 1 1.7470 -6.6205 -3.8920 17 1 1.5360 -4.5840 -5.1912 18 1 -0.3633 -1.0121 0.1779 19 1 -0.3634 0.3521 -0.9655 20 1 -0.3633 0.6602 0.7877 21 1 1.6827 1.8826 -0.9110 22 1 1.6135 1.9092 0.8682 23 1 3.8385 0.8643 0.9965 24 1 3.9228 2.3396 0.0033 25 1 3.8385 -1.3084 -0.1677 26 1 3.9222 -1.2985 -1.9465 27 1 1.8464 -2.6968 -0.2111 28 1 0.3691 -2.1697 -1.0526 29 1 0.7765 -5.8581 -1.6027 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994314.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -69.612892 kcal Electronic energy + Delta-G solvation = -11799.564549 eV Core-core repulsion = 9721.589558 eV Total energy + Delta-G solvation = -2077.974991 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.59172 -36.92149 -35.30107 -33.04884 -30.04407 -28.60969 -25.83647 -25.01001 -23.03926 -20.88045 -18.65280 -17.25872 -17.11346 -16.51219 -16.09935 -15.80684 -15.35612 -14.74089 -14.16435 -14.02738 -13.46309 -13.14012 -13.01095 -12.61157 -12.57450 -12.29179 -11.96192 -11.69097 -11.25992 -11.22907 -10.63727 -10.40334 -9.30751 -8.20419 -6.31324 1.41346 1.43783 1.51676 2.40217 2.89129 3.04773 3.14257 3.98359 4.09673 4.16954 4.23399 4.33164 4.59034 4.64381 4.68130 4.77987 4.86948 4.96937 4.99334 5.13586 5.42246 5.59045 5.71844 5.98803 6.15787 6.24619 6.28203 6.83346 7.37607 8.91364 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.056345 B = 0.011509 C = 0.010086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.819627 B = 2432.361393 C = 2775.432891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.554 5.554 3 C 0.017 3.983 4 C 0.057 3.943 5 O -0.406 6.406 6 C 0.087 3.913 7 C 0.066 3.934 8 H 0.023 0.977 9 C 0.043 3.957 10 C -0.541 4.541 11 H 0.060 0.940 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.963 3.037 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.269 1.269 18 H 0.054 0.946 19 H 0.019 0.981 20 H 0.091 0.909 21 H 0.034 0.966 22 H 0.109 0.891 23 H 0.058 0.942 24 H 0.126 0.874 25 H 0.047 0.953 26 H 0.094 0.906 27 H -0.001 1.001 28 H -0.001 1.001 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 10.669 2.368 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.279 5.279 3 C -0.111 4.111 4 C -0.019 4.019 5 O -0.325 6.325 6 C 0.010 3.990 7 C -0.042 4.042 8 H 0.041 0.959 9 C 0.006 3.994 10 C -0.579 4.579 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.787 3.213 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.194 1.194 18 H 0.073 0.927 19 H 0.038 0.962 20 H 0.110 0.890 21 H 0.052 0.948 22 H 0.128 0.872 23 H 0.077 0.923 24 H 0.144 0.856 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.525 10.358 2.718 11.002 hybrid contribution -0.557 -0.600 -1.186 1.441 sum 1.968 9.757 1.532 10.071 Atomic orbital electron populations 1.22336 0.86775 1.02251 1.00347 1.62252 1.08883 1.13872 1.42926 1.22907 0.96837 0.89247 1.02112 1.22900 0.92304 0.97226 0.89506 1.87903 1.70396 1.24483 1.49716 1.22497 0.91978 0.82543 1.01970 1.22209 0.95939 0.95784 0.90263 0.95923 1.18917 0.94918 0.89710 0.95850 1.21524 1.37067 0.94910 1.04448 0.92188 1.25898 0.95021 0.98673 0.99659 1.70088 1.41511 1.10403 1.34967 0.85540 0.79168 0.77261 0.79339 1.19003 1.20829 1.19392 0.92748 0.96232 0.88993 0.94776 0.87237 0.92342 0.85620 0.93438 0.88813 0.98280 0.98248 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 9.01 127.69 1.15 2.20 15 2 N -0.55 -20.63 4.80 -896.03 -4.30 -24.93 15 3 C 0.02 0.48 5.64 86.32 0.49 0.97 15 4 C 0.06 1.59 7.01 72.02 0.50 2.09 15 5 O -0.41 -14.79 10.83 -148.98 -1.61 -16.40 15 6 C 0.09 3.59 6.05 72.02 0.44 4.03 15 7 C 0.07 2.93 1.98 44.93 0.09 3.02 15 8 H 0.02 1.05 8.14 -2.39 -0.02 1.04 15 9 C 0.04 2.32 4.30 29.85 0.13 2.45 15 10 C -0.54 -30.56 8.36 25.60 0.21 -30.35 15 11 H 0.06 3.26 7.27 -2.91 -0.02 3.24 15 12 C 0.01 0.33 5.46 84.65 0.46 0.80 15 13 N -0.93 -56.30 13.29 21.45 0.28 -56.02 15 14 Si 0.96 44.05 29.54 68.60 2.03 46.08 15 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 18 H 0.05 2.11 6.53 -2.39 -0.02 2.10 15 19 H 0.02 0.66 8.12 -2.39 -0.02 0.64 15 20 H 0.09 2.43 8.04 -2.38 -0.02 2.41 15 21 H 0.03 1.00 8.14 -2.39 -0.02 0.98 15 22 H 0.11 2.43 8.09 -2.39 -0.02 2.41 15 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 15 24 H 0.13 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.09 4.02 7.19 -2.39 -0.02 4.00 15 27 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 15 28 H 0.00 -0.04 6.24 -2.39 -0.01 -0.05 15 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 Total: -1.00 -64.08 236.21 0.98 -63.10 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.11 Total: 2.97 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 3.47 Total: -14.80 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -4.01 Total: -80.94 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.61 Total: -16.40 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.08 0.98 -63.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994314.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.517 kcal (2) G-P(sol) polarization free energy of solvation -64.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds