Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47008 * 110.99973 * 2 1 4 4 C 1.53100 * 109.25917 * 182.39181 * 3 2 1 5 5 O 1.43013 * 109.25662 * 303.15261 * 4 3 2 6 6 C 1.43015 * 113.74304 * 58.67100 * 5 4 3 7 7 C 1.47019 * 111.00057 * 123.63442 * 2 1 3 8 8 H 1.08995 * 109.50456 * 297.58669 * 7 2 1 9 9 C 1.53003 * 109.50267 * 57.67254 * 7 2 1 10 10 C 1.50700 * 109.46797 * 183.68476 * 9 7 2 11 11 H 1.08004 * 119.99850 * 5.05435 * 10 9 7 12 12 C 1.37873 * 120.00095 * 185.05124 * 10 9 7 13 13 N 1.31514 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47393 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47254 * 59.99509 * 14 12 10 17 17 H 1.48502 * 109.46800 * 299.99939 * 14 12 10 18 18 H 1.08998 * 109.47166 * 290.13182 * 1 2 3 19 19 H 1.09002 * 109.47316 * 50.13514 * 1 2 3 20 20 H 1.09001 * 109.47067 * 170.13464 * 1 2 3 21 21 H 1.08998 * 109.51050 * 302.32751 * 3 2 1 22 22 H 1.09002 * 109.50725 * 62.45787 * 3 2 1 23 23 H 1.08999 * 109.50739 * 63.08816 * 4 3 2 24 24 H 1.09005 * 109.50549 * 183.17448 * 4 3 2 25 25 H 1.08999 * 109.50856 * 181.39612 * 6 5 4 26 26 H 1.08998 * 109.50664 * 61.26150 * 6 5 4 27 27 H 1.08998 * 109.47169 * 63.69299 * 9 7 2 28 28 H 1.08991 * 109.47479 * 303.68559 * 9 7 2 29 29 H 0.97003 * 119.99893 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3724 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0174 0.5574 1.0403 6 6 3.5250 -0.7850 1.0710 7 6 1.9959 -0.7602 1.1428 8 1 1.6821 -0.2847 2.0720 9 6 1.4589 -2.1921 1.0949 10 6 1.9259 -2.9447 2.3142 11 1 2.4746 -2.4300 3.0891 12 6 1.6527 -4.2902 2.4404 13 7 0.9850 -4.9170 1.4966 14 14 2.2310 -5.2229 3.9521 15 1 1.8142 -6.6443 3.8463 16 1 1.6279 -4.6188 5.1673 17 1 3.7112 -5.1472 4.0442 18 1 -0.3633 0.3537 0.9649 19 1 -0.3634 0.6587 -0.7888 20 1 -0.3633 -1.0125 -0.1761 21 1 1.6134 1.9092 -0.8682 22 1 1.6827 1.8825 0.9110 23 1 3.8385 0.8644 -0.9964 24 1 3.9221 2.3399 -0.0037 25 1 3.9222 -1.2985 1.9465 26 1 3.8385 -1.3084 0.1678 27 1 1.8284 -2.6889 0.1978 28 1 0.3694 -2.1712 1.0761 29 1 0.6844 -4.4326 0.7118 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994315.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = -51.919357 kcal Electronic energy + Delta-G solvation = -11833.162220 eV Core-core repulsion = 9755.954478 eV Total energy + Delta-G solvation = -2077.207742 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.17368 -35.48754 -33.62433 -31.20441 -28.56904 -26.54328 -23.85904 -23.54869 -21.61382 -19.42603 -16.86516 -15.89251 -15.74880 -14.85268 -14.41419 -13.94724 -13.70583 -13.37793 -12.70188 -12.31400 -11.98080 -11.46652 -11.39424 -11.06934 -10.78135 -10.43917 -10.19176 -10.09508 -9.71132 -9.05661 -8.59476 -8.33281 -7.89539 -6.38384 -4.08125 3.44009 3.45506 3.64216 4.24792 4.36454 4.56308 5.22357 5.37207 5.39434 5.47186 5.58065 5.78249 5.83638 5.93765 5.99917 6.05291 6.28837 6.34425 6.58313 6.70467 7.20639 7.33423 7.51831 7.54176 7.68190 8.18564 8.42586 8.85294 9.64095 11.02201 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.056100 B = 0.011612 C = 0.010141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.984707 B = 2410.710926 C = 2760.354763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.065 3.935 5 O -0.396 6.396 6 C 0.079 3.921 7 C 0.063 3.937 8 H 0.038 0.962 9 C 0.019 3.981 10 C -0.604 4.604 11 H 0.050 0.950 12 C 0.018 3.982 13 N -0.910 5.910 14 Si 1.068 2.932 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.287 1.287 18 H 0.022 0.978 19 H 0.057 0.943 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.035 0.965 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.052 0.948 27 H 0.019 0.981 28 H 0.011 0.989 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 9.916 -2.419 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.268 5.268 3 C -0.111 4.111 4 C -0.013 4.013 5 O -0.315 6.315 6 C 0.002 3.998 7 C -0.045 4.045 8 H 0.056 0.944 9 C -0.018 4.018 10 C -0.643 4.643 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.546 5.546 14 Si 0.896 3.104 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.213 1.213 18 H 0.040 0.960 19 H 0.076 0.924 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.233 8.259 -1.996 8.786 hybrid contribution -0.613 1.891 -0.205 1.998 sum 1.620 10.150 -2.202 10.512 Atomic orbital electron populations 1.22334 0.87610 1.02696 0.99298 1.62301 1.07935 1.11961 1.44593 1.22756 0.96677 0.91066 1.00641 1.22546 0.92324 0.95929 0.90455 1.87929 1.70214 1.25365 1.48001 1.22763 0.92788 0.81363 1.02844 1.22373 0.95256 0.97185 0.89698 0.94440 1.19256 0.95760 0.88941 0.97826 1.21998 1.40005 0.96649 1.05644 0.93172 1.25826 0.94878 0.95319 1.02626 1.70781 1.34966 1.39729 1.09160 0.83556 0.76120 0.76177 0.74540 1.20756 1.21471 1.21323 0.95973 0.92432 0.90524 0.90568 0.94718 0.92816 0.89351 0.87500 0.92932 0.96291 0.97042 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.01 60.06 0.54 1.04 15 2 N -0.54 -10.36 4.80 -234.57 -1.12 -11.49 15 3 C 0.02 0.27 5.64 -3.71 -0.02 0.25 15 4 C 0.06 1.00 7.01 37.21 0.26 1.26 15 5 O -0.40 -7.60 10.83 -35.23 -0.38 -7.98 15 6 C 0.08 1.65 6.03 37.21 0.22 1.87 15 7 C 0.06 1.38 2.00 -67.60 -0.14 1.24 15 8 H 0.04 0.88 8.14 -51.93 -0.42 0.45 15 9 C 0.02 0.50 3.63 -27.88 -0.10 0.40 15 10 C -0.60 -16.98 8.35 -34.44 -0.29 -17.27 15 11 H 0.05 1.39 7.18 -52.48 -0.38 1.01 15 12 C 0.02 0.51 5.46 -17.82 -0.10 0.41 15 13 N -0.91 -27.78 13.65 55.43 0.76 -27.02 15 14 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 18 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 15 19 H 0.06 0.83 8.04 -51.93 -0.42 0.41 15 20 H 0.08 1.43 6.55 -51.93 -0.34 1.09 15 21 H 0.08 1.01 8.09 -51.93 -0.42 0.59 15 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.11 2.31 7.09 -51.93 -0.37 1.95 15 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.02 0.52 7.81 -51.93 -0.41 0.11 15 28 H 0.01 0.31 6.31 -51.93 -0.33 -0.02 15 29 H 0.27 8.21 7.19 -40.82 -0.29 7.91 15 LS Contribution 234.71 15.07 3.54 3.54 Total: -1.00 -30.53 234.71 -6.19 -36.72 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.28 Total: -3.09 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 0.38 Total: -10.79 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.37 Total: -38.51 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.38 Total: -7.98 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.53 -6.19 -36.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994315.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.199 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds