Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47008 * 110.99973 * 2 1 4 4 C 1.53100 * 109.25917 * 182.39181 * 3 2 1 5 5 O 1.43013 * 109.25662 * 303.15261 * 4 3 2 6 6 C 1.43015 * 113.74304 * 58.67100 * 5 4 3 7 7 C 1.47019 * 111.00057 * 123.63442 * 2 1 3 8 8 H 1.08995 * 109.50456 * 297.58669 * 7 2 1 9 9 C 1.53003 * 109.50267 * 57.67254 * 7 2 1 10 10 C 1.50700 * 109.46797 * 183.68476 * 9 7 2 11 11 H 1.08004 * 119.99850 * 5.05435 * 10 9 7 12 12 C 1.37873 * 120.00095 * 185.05124 * 10 9 7 13 13 N 1.31514 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47393 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47254 * 59.99509 * 14 12 10 17 17 H 1.48502 * 109.46800 * 299.99939 * 14 12 10 18 18 H 1.08998 * 109.47166 * 290.13182 * 1 2 3 19 19 H 1.09002 * 109.47316 * 50.13514 * 1 2 3 20 20 H 1.09001 * 109.47067 * 170.13464 * 1 2 3 21 21 H 1.08998 * 109.51050 * 302.32751 * 3 2 1 22 22 H 1.09002 * 109.50725 * 62.45787 * 3 2 1 23 23 H 1.08999 * 109.50739 * 63.08816 * 4 3 2 24 24 H 1.09005 * 109.50549 * 183.17448 * 4 3 2 25 25 H 1.08999 * 109.50856 * 181.39612 * 6 5 4 26 26 H 1.08998 * 109.50664 * 61.26150 * 6 5 4 27 27 H 1.08998 * 109.47169 * 63.69299 * 9 7 2 28 28 H 1.08991 * 109.47479 * 303.68559 * 9 7 2 29 29 H 0.97003 * 119.99893 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3724 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0174 0.5574 1.0403 6 6 3.5250 -0.7850 1.0710 7 6 1.9959 -0.7602 1.1428 8 1 1.6821 -0.2847 2.0720 9 6 1.4589 -2.1921 1.0949 10 6 1.9259 -2.9447 2.3142 11 1 2.4746 -2.4300 3.0891 12 6 1.6527 -4.2902 2.4404 13 7 0.9850 -4.9170 1.4966 14 14 2.2310 -5.2229 3.9521 15 1 1.8142 -6.6443 3.8463 16 1 1.6279 -4.6188 5.1673 17 1 3.7112 -5.1472 4.0442 18 1 -0.3633 0.3537 0.9649 19 1 -0.3634 0.6587 -0.7888 20 1 -0.3633 -1.0125 -0.1761 21 1 1.6134 1.9092 -0.8682 22 1 1.6827 1.8825 0.9110 23 1 3.8385 0.8644 -0.9964 24 1 3.9221 2.3399 -0.0037 25 1 3.9222 -1.2985 1.9465 26 1 3.8385 -1.3084 0.1678 27 1 1.8284 -2.6889 0.1978 28 1 0.3694 -2.1712 1.0761 29 1 0.6844 -4.4326 0.7118 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994315.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = -74.198376 kcal Electronic energy + Delta-G solvation = -11834.128311 eV Core-core repulsion = 9755.954478 eV Total energy + Delta-G solvation = -2078.173833 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.69823 -37.06469 -35.61574 -32.98807 -30.03958 -28.38178 -25.76522 -25.08471 -23.28779 -21.05958 -18.99116 -17.38293 -17.30067 -16.36479 -15.90703 -15.69407 -15.42206 -14.90831 -14.52615 -14.19717 -13.49989 -13.20523 -13.04997 -12.68892 -12.48377 -12.03286 -11.98795 -11.84590 -11.40760 -10.77533 -10.63756 -10.46523 -9.41783 -8.69259 -6.39852 1.53626 1.61582 1.80879 2.55233 2.80526 2.95366 3.16320 3.88162 3.99671 4.05766 4.13082 4.25516 4.48804 4.55622 4.56835 4.70339 4.73742 4.87573 4.87896 5.02904 5.16622 5.33178 5.76849 6.05133 6.07546 6.13756 6.18619 6.56064 7.41585 8.71539 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.056100 B = 0.011612 C = 0.010141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.984707 B = 2410.710926 C = 2760.354763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.554 5.554 3 C 0.017 3.983 4 C 0.056 3.944 5 O -0.405 6.405 6 C 0.089 3.911 7 C 0.073 3.927 8 H 0.022 0.978 9 C 0.028 3.972 10 C -0.615 4.615 11 H 0.052 0.948 12 C -0.034 4.034 13 N -0.936 5.936 14 Si 1.116 2.884 15 H -0.284 1.284 16 H -0.270 1.270 17 H -0.267 1.267 18 H 0.019 0.981 19 H 0.094 0.906 20 H 0.052 0.948 21 H 0.112 0.888 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.128 0.872 25 H 0.093 0.907 26 H 0.046 0.954 27 H -0.005 1.005 28 H -0.004 1.004 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 11.372 -2.234 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.279 5.279 3 C -0.111 4.111 4 C -0.020 4.020 5 O -0.324 6.324 6 C 0.012 3.988 7 C -0.036 4.036 8 H 0.040 0.960 9 C -0.009 4.009 10 C -0.653 4.653 11 H 0.070 0.930 12 C -0.232 4.232 13 N -0.573 5.573 14 Si 0.937 3.063 15 H -0.209 1.209 16 H -0.196 1.196 17 H -0.192 1.192 18 H 0.038 0.962 19 H 0.113 0.887 20 H 0.071 0.929 21 H 0.130 0.870 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.146 0.854 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.013 0.987 28 H 0.014 0.986 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.858 9.757 -1.829 10.330 hybrid contribution -0.832 1.543 -0.341 1.786 sum 2.026 11.300 -2.170 11.684 Atomic orbital electron populations 1.22347 0.86741 1.02207 1.00494 1.62267 1.08900 1.14079 1.42701 1.22919 0.96874 0.89070 1.02248 1.22918 0.92267 0.97327 0.89483 1.87912 1.70356 1.24343 1.49767 1.22466 0.91806 0.82659 1.01903 1.22068 0.96057 0.95124 0.90348 0.96008 1.19082 0.94662 0.91277 0.95928 1.22368 1.39494 0.97150 1.06325 0.92960 1.27380 0.94238 0.96887 1.04712 1.70916 1.36861 1.39876 1.09628 0.82951 0.76935 0.74806 0.71611 1.20912 1.19568 1.19195 0.96248 0.88720 0.92879 0.87025 0.94719 0.92290 0.85432 0.88908 0.93524 0.98705 0.98629 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.01 127.69 1.15 2.16 15 2 N -0.55 -20.45 4.80 -896.06 -4.30 -24.75 15 3 C 0.02 0.47 5.64 86.32 0.49 0.96 15 4 C 0.06 1.56 7.01 72.02 0.50 2.07 15 5 O -0.40 -14.79 10.83 -148.98 -1.61 -16.40 15 6 C 0.09 3.69 6.03 72.01 0.43 4.12 15 7 C 0.07 3.21 2.00 44.93 0.09 3.30 15 8 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 9 C 0.03 1.48 3.63 29.85 0.11 1.59 15 10 C -0.62 -35.08 8.35 25.60 0.21 -34.86 15 11 H 0.05 2.90 7.18 -2.91 -0.02 2.88 15 12 C -0.03 -2.00 5.46 84.65 0.46 -1.53 15 13 N -0.94 -58.29 13.65 21.45 0.29 -57.99 15 14 Si 1.12 50.27 29.90 68.60 2.05 52.32 15 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 18 H 0.02 0.65 8.12 -2.39 -0.02 0.63 15 19 H 0.09 2.45 8.04 -2.39 -0.02 2.43 15 20 H 0.05 2.01 6.55 -2.39 -0.02 1.99 15 21 H 0.11 2.43 8.09 -2.39 -0.02 2.41 15 22 H 0.03 1.01 8.14 -2.39 -0.02 0.99 15 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 24 H 0.13 2.57 8.14 -2.38 -0.02 2.55 15 25 H 0.09 4.05 7.09 -2.39 -0.02 4.04 15 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 27 H -0.01 -0.31 7.81 -2.39 -0.02 -0.33 15 28 H 0.00 -0.25 6.31 -2.39 -0.02 -0.26 15 29 H 0.26 16.15 7.19 -92.71 -0.67 15.49 15 Total: -1.00 -65.90 234.71 1.10 -64.80 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.21 Total: 4.24 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.45 Total: -22.21 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -4.00 Total: -82.75 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.61 Total: -16.40 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -65.90 1.10 -64.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994315.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.401 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds