Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.46629 * 2 1 4 4 C 1.53045 * 109.45799 * 240.08965 * 2 1 3 5 5 C 1.53118 * 109.27302 * 180.86969 * 4 2 1 6 6 H 1.09006 * 109.52626 * 297.62579 * 5 4 2 7 7 O 1.42901 * 109.52202 * 177.49909 * 5 4 2 8 8 C 1.34934 * 116.99894 * 150.12777 * 7 5 4 9 9 H 1.08004 * 119.99676 * 359.72930 * 8 7 5 10 10 C 1.38628 * 119.99943 * 179.97438 * 8 7 5 11 11 N 1.31581 * 120.00158 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00049 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47055 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47016 * 120.00168 * 12 10 8 15 15 H 1.48495 * 109.47483 * 240.00525 * 12 10 8 16 16 C 1.53118 * 109.21352 * 57.56549 * 5 4 2 17 17 C 1.53043 * 109.27577 * 302.37681 * 16 5 4 18 18 N 1.46848 * 109.52355 * 59.17811 * 17 16 5 19 19 H 1.09002 * 109.47130 * 300.02716 * 1 2 3 20 20 H 1.09005 * 109.47074 * 60.01778 * 1 2 3 21 21 H 1.08996 * 109.48104 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.55503 * 60.90488 * 4 2 1 23 23 H 1.08994 * 109.45827 * 300.77905 * 4 2 1 24 24 H 0.97005 * 120.00168 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.50667 * 62.31409 * 16 5 4 26 26 H 1.08998 * 109.50928 * 182.43689 * 16 5 4 27 27 H 1.08999 * 109.46016 * 179.19564 * 17 16 5 28 28 H 1.09000 * 109.46371 * 299.16326 * 17 16 5 29 29 H 1.00899 * 111.00244 * 174.16201 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7196 -1.2508 5 6 3.5708 -0.7361 -1.2357 6 1 3.9466 0.2866 -1.2678 7 8 4.0519 -1.4575 -2.3716 8 6 5.2483 -1.0850 -2.8721 9 1 5.7943 -0.2716 -2.4174 10 6 5.7743 -1.7431 -3.9730 11 7 5.1067 -2.7305 -4.5303 12 14 7.4303 -1.2269 -4.6664 13 1 7.9726 -0.0998 -3.8659 14 1 8.3715 -2.3741 -4.6061 15 1 7.2637 -0.7969 -6.0779 16 6 4.0547 -1.4190 0.0466 17 6 3.4864 -0.6779 1.2590 18 7 2.0192 -0.6919 1.1993 19 1 -0.3633 0.5143 0.8898 20 1 -0.3633 0.5136 -0.8902 21 1 -0.3635 -1.0276 0.0005 22 1 1.6904 -0.1961 -2.1408 23 1 1.6649 -1.7430 -1.2592 24 1 5.4746 -3.1908 -5.3009 25 1 3.7123 -2.4538 0.0593 26 1 5.1438 -1.3950 0.0831 27 1 3.8174 -1.1702 2.1734 28 1 3.8403 0.3530 1.2532 29 1 1.6194 -0.2927 2.0353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = -47.025865 kcal Electronic energy + Delta-G solvation = -11622.331298 eV Core-core repulsion = 9545.335754 eV Total energy + Delta-G solvation = -2076.995544 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51571 -35.73375 -32.07552 -31.73281 -29.97309 -26.65121 -24.48609 -22.47863 -21.06153 -19.21592 -17.41793 -16.11447 -15.21460 -14.72199 -14.02884 -13.83218 -13.60345 -13.05327 -12.49205 -11.92330 -11.72777 -11.51489 -11.27528 -11.08868 -10.80857 -10.65222 -10.54936 -10.27437 -9.71224 -9.31692 -9.00761 -8.20411 -7.91304 -5.90208 -3.53196 3.32773 3.35885 3.40340 4.33510 4.40536 5.11466 5.25822 5.36134 5.48197 5.52229 5.66146 5.81801 5.90241 5.96507 6.04545 6.17081 6.27366 6.35392 6.55674 6.64449 6.82597 6.98636 7.09846 7.35149 7.51533 7.64940 8.47991 9.53274 10.24086 11.31025 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.070151 B = 0.009828 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.043876 B = 2848.193647 C = 3043.109762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.033 0.967 4 C -0.106 4.106 5 C 0.099 3.901 6 H 0.032 0.968 7 O -0.286 6.286 8 C -0.357 4.357 9 H 0.061 0.939 10 C 0.021 3.979 11 N -0.889 5.889 12 Si 0.922 3.078 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.136 4.136 17 C 0.063 3.937 18 N -0.685 5.685 19 H 0.048 0.952 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.257 0.743 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 5.717 9.457 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.050 0.950 4 C -0.144 4.144 5 C 0.039 3.961 6 H 0.050 0.950 7 O -0.201 6.201 8 C -0.436 4.436 9 H 0.079 0.921 10 C -0.177 4.177 11 N -0.533 5.533 12 Si 0.750 3.250 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.175 4.175 17 C -0.066 4.066 18 N -0.317 5.317 19 H 0.067 0.933 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.181 4.838 8.943 11.412 hybrid contribution 1.211 1.362 0.030 1.823 sum -3.971 6.200 8.973 11.607 Atomic orbital electron populations 1.21804 0.94602 1.02525 1.01138 1.21455 0.94771 0.94980 0.91087 0.94951 1.21638 0.95825 1.01529 0.95385 1.21737 0.92553 0.94084 0.87725 0.95023 1.85693 1.35983 1.56760 1.41644 1.20916 0.95022 1.15898 1.11790 0.92130 1.24936 0.98772 0.97001 0.96957 1.70035 1.37719 1.22793 1.22724 0.85933 0.82193 0.78015 0.78866 1.20011 1.20911 1.20930 1.22139 1.00145 1.00884 0.94302 1.21904 0.87222 0.98281 0.99231 1.60336 1.07618 1.59404 1.04346 0.93257 0.92130 0.91701 0.91593 0.90829 0.93339 0.91053 0.91717 0.91326 0.95848 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.43 37.16 0.35 -1.44 15 2 C 0.09 1.33 3.04 -67.72 -0.21 1.13 15 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 4 C -0.11 -2.07 5.03 -26.65 -0.13 -2.20 15 5 C 0.10 2.25 2.72 -26.61 -0.07 2.18 15 6 H 0.03 0.72 7.80 -51.93 -0.41 0.32 15 7 O -0.29 -8.40 9.43 -16.52 -0.16 -8.56 15 8 C -0.36 -10.69 9.78 30.88 0.30 -10.39 15 9 H 0.06 1.72 7.64 -52.48 -0.40 1.32 15 10 C 0.02 0.64 5.49 -17.51 -0.10 0.54 15 11 N -0.89 -28.47 13.67 55.48 0.76 -27.71 15 12 Si 0.92 22.45 29.55 -169.99 -5.02 17.42 15 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 16 C -0.14 -2.74 5.72 -26.65 -0.15 -2.90 15 17 C 0.06 0.99 6.55 -3.83 -0.03 0.96 15 18 N -0.69 -10.15 6.50 -106.76 -0.69 -10.85 15 19 H 0.05 0.52 8.14 -51.93 -0.42 0.09 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 25 H 0.07 1.53 8.14 -51.93 -0.42 1.10 15 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 15 29 H 0.33 3.99 8.79 -39.29 -0.35 3.65 15 LS Contribution 242.21 15.07 3.65 3.65 Total: -1.00 -33.03 242.21 -6.01 -39.04 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.51 Total: -0.88 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.03 Total: -12.12 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.06 Total: -38.55 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.16 Total: -8.56 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.03 -6.01 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.985 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds